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Source database (GenBank or RefSeq) File type

mHipAmp2.hap2

Organism name:

Hippopotamus amphibius kiboko (hippopotamus)

Isolate:

mHipAmp2

Sex:

female

BioSample:

SAMN33342074

BioProject:

PRJNA936168

Submitter:

Vertebrate Genomes Project

Date:

2023/05/18

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_030028045.1 (latest)

RefSeq assembly accession:

GCF_030028045.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JASFZL01

Assembly method:

Hifiasm + Hi-C phasing v. 0.16.1 + galaxy4; yahs v. 1.2a.3 + galaxy0

Expected final version:

Genome coverage:

33.0x

Sequencing technology:

PacBio Sequel II HiFi; Arima Hi-C v2

IDs: 16628681 [UID] 42777478 [GenBank] 43684988 [RefSeq]

See Genome Information for Hippopotamus amphibius

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_030028045.1	≠	GCF_030028045.1	mHipAmp2.hap2	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,538,259,262
Total ungapped length	2,538,214,062
Gaps between scaffolds	0
Number of scaffolds	357
Scaffold N50	149,218,186
Scaffold L50	7
Number of contigs	583
Contig N50	50,348,260
Contig L50	18
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	357

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM057484.1	=	NC_080186.1	0
Chromosome 2	CM057485.1	=	NC_080187.1	0
Chromosome 3	CM057486.1	=	NC_080188.1	0
Chromosome 4	CM057487.1	=	NC_080189.1	0
Chromosome 5	CM057488.1	=	NC_080190.1	0
Chromosome 6	CM057489.1	=	NC_080191.1	0
Chromosome 7	CM057490.1	=	NC_080192.1	0
Chromosome 8	CM057491.1	=	NC_080193.1	0
Chromosome 9	CM057492.1	=	NC_080194.1	0
Chromosome 10	CM057493.1	=	NC_080195.1	0
Chromosome 11	CM057494.1	=	NC_080196.1	0
Chromosome 12	CM057495.1	=	NC_080197.1	0
Chromosome 13	CM057496.1	=	NC_080198.1	0
Chromosome 14	CM057497.1	=	NC_080199.1	0
Chromosome 15	CM057498.1	=	NC_080200.1	0
Chromosome 16	CM057499.1	=	NC_080201.1	0
Chromosome 17	CM057500.1	=	NC_080202.1	0
Chromosome X	CM057501.1	=	NC_080203.1	0
unplaced	n/a	n/a	n/a	338

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,538,242,855	356	2,538,197,655	149,218,186	226
Chromosome 1	240,032,215	1	240,029,815	240,032,215	12
Chromosome 2	231,733,616	1	231,726,616	231,733,616	35
Chromosome 3	199,508,932	1	199,502,532	199,508,932	32
Chromosome 4	188,313,745	1	188,312,345	188,313,745	7
Chromosome 5	174,737,295	1	174,735,895	174,737,295	7
Chromosome 6	171,963,845	1	171,961,445	171,963,845	12
Chromosome 7	149,218,186	1	149,214,186	149,218,186	20
Chromosome 8	147,384,057	1	147,383,257	147,384,057	4
Chromosome 9	144,140,652	1	144,139,252	144,140,652	7
Chromosome 10	117,760,046	1	117,759,446	117,760,046	3
Chromosome 11	115,335,292	1	115,334,492	115,335,292	4
Chromosome 12	104,252,478	1	104,250,878	104,252,478	8
Chromosome 13	103,805,294	1	103,802,694	103,805,294	13
Chromosome 14	80,663,695	1	80,662,495	80,663,695	6
Chromosome 15	69,697,670	1	69,691,670	69,697,670	30
Chromosome 16	64,664,786	1	64,663,386	64,664,786	7
Chromosome 17	64,548,140	1	64,546,940	64,548,140	6
Chromosome X	137,581,077	1	137,578,477	137,581,077	13
unplaced	32,901,834	338	32,901,834	115,092	0

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mHipAmp2.hap2

See Genome Information for Hippopotamus amphibius

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear