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Source database (GenBank or RefSeq) File type

rEulEur1.hap1

Organism name:

Euleptes europaea (tarantolino)

Isolate:

rEulEur1

Sex:

male

BioSample:

SAMN32622440

BioProject:

PRJNA919166

Submitter:

Vertebrate Genomes Project

Date:

2023/05/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_029931775.1 (latest)

RefSeq assembly accession:

GCF_029931775.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT

Data displayed for RefSeq version

WGS Project:

JARABC01

Assembly method:

Hifiasm + Hi-C phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2

Expected final version:

Genome coverage:

38.0x

Sequencing technology:

PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2

IDs: 16585801 [UID] 42667328 [GenBank] 42810608 [RefSeq]

See Genome Information for Euleptes europaea

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_029931775.1	≠	GCF_029931775.1	rEulEur1.hap1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,781,916,107
Total ungapped length	1,777,871,067
Gaps between scaffolds	0
Number of scaffolds	591
Scaffold N50	102,317,683
Scaffold L50	7
Number of contigs	744
Contig N50	26,991,305
Contig L50	20
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	591

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM057261.1	=	NC_079312.1	0
Chromosome 2	CM057262.1	=	NC_079313.1	0
Chromosome 3	CM057263.1	=	NC_079314.1	0
Chromosome 4	CM057264.1	=	NC_079315.1	0
Chromosome 5	CM057265.1	=	NC_079316.1	0
Chromosome 6	CM057266.1	=	NC_079317.1	0
Chromosome 7	CM057267.1	=	NC_079318.1	0
Chromosome 8	CM057268.1	=	NC_079319.1	0
Chromosome 9	CM057269.1	=	NC_079320.1	0
Chromosome 10	CM057270.1	=	NC_079321.1	0
Chromosome 11	CM057271.1	=	NC_079322.1	0
Chromosome 12	CM057272.1	=	NC_079323.1	0
Chromosome 13	CM057273.1	=	NC_079324.1	0
Chromosome 14	CM057274.1	=	NC_079325.1	0
Chromosome 15	CM057275.1	=	NC_079326.1	0
Chromosome 16	CM057276.1	=	NC_079327.1	0
Chromosome 17	CM057277.1	=	NC_079328.1	0
Chromosome 18	CM057278.1	=	NC_079329.1	0
Chromosome 19	CM057279.1	=	NC_079330.1	0
Chromosome 20	CM057280.1	=	NC_079331.1	0
Chromosome 21	CM057281.1	=	NC_079332.1	0
unplaced	n/a	n/a	n/a	570

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,781,916,107	591	1,777,871,067	102,317,683	153
Chromosome 1	183,506,054	1	181,927,200	183,506,054	23
Chromosome 2	141,841,699	1	141,727,517	141,841,699	10
Chromosome 3	125,082,854	1	124,928,955	125,082,854	7
Chromosome 4	123,839,631	1	123,676,304	123,839,631	10
Chromosome 5	115,237,933	1	114,661,667	115,237,933	11
Chromosome 6	109,329,079	1	109,262,962	109,329,079	6
Chromosome 7	102,317,683	1	102,257,298	102,317,683	7
Chromosome 8	99,457,302	1	99,161,614	99,457,302	5
Chromosome 9	93,209,167	1	92,977,324	93,209,167	12
Chromosome 10	81,364,908	1	81,344,399	81,364,908	2
Chromosome 11	80,182,816	1	80,090,655	80,182,816	7
Chromosome 12	71,032,696	1	70,976,291	71,032,696	6
Chromosome 13	65,465,124	1	65,456,659	65,465,124	5
Chromosome 14	61,726,469	1	61,684,727	61,726,469	7
Chromosome 15	60,396,022	1	60,316,534	60,396,022	4
Chromosome 16	57,209,769	1	57,209,756	57,209,769	1
Chromosome 17	51,886,758	1	51,867,778	51,886,758	3
Chromosome 18	42,880,371	1	42,860,815	42,880,371	6
Chromosome 19	40,794,763	1	40,671,898	40,794,763	7
Chromosome 20	25,754,197	1	25,432,895	25,754,197	7
Chromosome 21	19,923,149	1	19,900,156	19,923,149	7
unplaced	29,477,663	570	29,477,663	67,954	0

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rEulEur1.hap1

See Genome Information for Euleptes europaea

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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