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bColStr4.1.hap1

Organism name:
Colius striatus (speckled mousebird)
Isolate:
bColStr4
Sex:
female
BioSample:
SAMN33339572
BioProject:
PRJNA936149
Submitter:
Vertebrate Genomes Project
Date:
2023/02/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028858725.2 (latest)
RefSeq assembly accession:
GCF_028858725.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JARBXP01
Assembly method:
HiFiasm + trio phasing v. 0.16.1 + galaxy2; Bionano Solve v. 3.7; salsa v. 2.3 + galaxy2
Expected final version:
no
Genome coverage:
28.91x
Sequencing technology:
PacBio Sequel II HiFi; Bionano DLS; Arima Hi-C v2

IDs: 20296931 [UID] 51356378 [GenBank] 51529468 [RefSeq]

See Genome Information for Colius striatus

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Some microchromosomes remain fragmented and unidentified due to high repeat content

Global statistics

Total sequence length1,212,482,152
Total ungapped length1,206,634,427
Gaps between scaffolds0
Number of scaffolds191
Scaffold N5089,023,854
Scaffold L505
Number of contigs349
Contig N5021,931,325
Contig L5016
Total number of chromosomes and plasmids33
Number of component sequences (WGS or clone)191

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_028858735.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM054345.1=NC_084759.11
Chromosome 2CM054346.1=NC_084760.10
Chromosome 3CM054347.1=NC_084761.11
Chromosome 4CM054348.1=NC_084762.10
Chromosome 5CM054349.1=NC_084763.10
Chromosome 6CM054350.1=NC_084764.10
Chromosome 7CM054351.1=NC_084765.10
Chromosome 8CM054352.1=NC_084766.10
Chromosome 9CM054353.1=NC_084767.10
Chromosome 10CM054354.1=NC_084768.10
Chromosome 11CM054355.1=NC_084769.10
Chromosome 12CM054356.1=NC_084770.10
Chromosome 13CM054357.1=NC_084771.10
Chromosome 14CM054358.1=NC_084772.10
Chromosome 15CM054359.1=NC_084773.10
Chromosome 16CM054360.1=NC_084774.10
Chromosome 17CM054361.1=NC_084775.13
Chromosome 18CM054362.1=NC_084776.10
Chromosome 19CM054363.1=NC_084777.10
Chromosome 20CM054364.1=NC_084778.10
Chromosome 21CM054365.1=NC_084779.10
Chromosome 22CM054366.1=NC_084780.11
Chromosome 23CM054367.1=NC_084781.10
Chromosome 24CM054368.1=NC_084782.10
Chromosome 25CM054369.1=NC_084783.10
Chromosome 26CM054370.1=NC_084784.12
Chromosome 27CM054371.1=NC_084785.10
Chromosome 28CM054372.1=NC_084786.10
Chromosome 29CM054373.1=NC_084787.10
Chromosome 30CM054374.1=NC_084788.10
Chromosome WCM054375.1=NC_084789.10
Chromosome ZCM054236.1=NC_084790.10
unplacedn/an/an/a150

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,212,464,8691901,206,617,14489,023,8541580
Chromosome 1AllAssembled moleculeUnlocalized scaffolds206,641,553206,588,61952,934211206,590,830206,537,89652,934206,588,619206,588,61952,93423230000
Chromosome 2Assembled molecule122,590,9391122,168,840122,590,93970
Chromosome 3AllAssembled moleculeUnlocalized scaffolds100,232,27699,866,656365,620211100,229,05099,863,430365,62099,866,65699,866,656365,620440000
Chromosome 4Assembled molecule97,552,025197,534,76997,552,02590
Chromosome 5Assembled molecule59,131,021158,924,02459,131,02150
Chromosome 6Assembled molecule47,671,338147,670,94147,671,33810
Chromosome 7Assembled molecule43,798,297143,798,09743,798,29710
Chromosome 8Assembled molecule39,243,326139,243,32639,243,32600
Chromosome 9Assembled molecule35,251,630135,199,11335,251,63020
Chromosome 10Assembled molecule34,456,810134,454,98434,456,81040
Chromosome 11Assembled molecule30,181,140130,174,40630,181,14010
Chromosome 12Assembled molecule28,603,071128,602,57128,603,07110
Chromosome 13Assembled molecule23,139,417123,138,31723,139,41740
Chromosome 14Assembled molecule22,975,093122,974,59322,975,09310
Chromosome 15Assembled molecule22,727,674122,727,47422,727,67410
Chromosome 16Assembled molecule17,800,485117,800,48517,800,48500
Chromosome 17AllAssembled moleculeUnlocalized scaffolds17,247,83217,044,399203,43341317,247,31917,043,886203,43317,044,39917,044,39967,460220000
Chromosome 18Assembled molecule12,955,907112,947,56512,955,90720
Chromosome 19Assembled molecule12,933,062112,932,36212,933,06220
Chromosome 20Assembled molecule12,470,069110,548,73512,470,06920
Chromosome 21Assembled molecule10,365,338110,364,83810,365,33810
Chromosome 22AllAssembled moleculeUnlocalized scaffolds9,310,7969,271,64039,1562119,310,3969,271,24039,1569,271,6409,271,64039,156220000
Chromosome 23Assembled molecule7,213,67217,213,1727,213,67210
Chromosome 24Assembled molecule6,546,07216,508,6676,546,07210
Chromosome 25Assembled molecule5,816,85115,815,9515,816,85130
Chromosome 26AllAssembled moleculeUnlocalized scaffolds4,489,7844,187,400302,3843124,485,0844,183,200301,8844,187,4004,187,400197,47213121000
Chromosome 27Assembled molecule3,703,55113,703,5513,703,55100
Chromosome 28Assembled molecule3,354,66013,303,0933,354,66080
Chromosome 29Assembled molecule1,997,12711,996,4271,997,12720
Chromosome 30Assembled molecule867,1191867,119867,11900
Chromosome WAssembled molecule42,315,177140,029,93342,315,177280
Chromosome ZAssembled molecule89,023,854189,004,07389,023,854150
unplacedAssembled molecule39,857,90315039,107,0391,882,691120
MoleculeTotal
Length
Mitochondrion MT17,283