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mNeoNeb1.pri

Organism name:
Neofelis nebulosa (Clouded leopard)
Isolate:
mNeoNeb1
Sex:
male
BioSample:
SAMN31801981
BioProject:
PRJNA915742
Submitter:
Vertebrate Genomes Project
Date:
2023/01/31
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028018385.1 (latest)
RefSeq assembly accession:
GCF_028018385.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAQMCS01
Assembly method:
HiFiasm v. 0.16.1 + galaxy2; purge_dups v. 1.2.5 + galaxy4; Bionano Solve v. 3.7.0 + galaxy0; salsa v. 2.3 + galaxy2
Expected final version:
no
Genome coverage:
32.2x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2
Linked assembly:
GCA_028018655.1 (alternate pseudohaplotype of diploid)

IDs: 15723431 [UID] 40362558 [GenBank] 45596768 [RefSeq]

See Genome Information for Neofelis nebulosa

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

PacBio and Bionano data were generated from a male individual, HiC data was generated from a female individual. Consequentially, Y chromosome shows no HiC signal

Global statistics

Total sequence length2,468,345,093
Total ungapped length2,466,981,241
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50150,204,169
Scaffold L507
Number of contigs214
Contig N5051,579,577
Contig L5016
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)33

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_028018535.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM051599.1=NC_080782.10
Chromosome 2CM051600.1=NC_080783.10
Chromosome 3CM051601.1=NC_080784.10
Chromosome 4CM051602.1=NC_080785.10
Chromosome 5CM051603.1=NC_080786.10
Chromosome 6CM051604.1=NC_080787.10
Chromosome 7CM051605.1=NC_080788.10
Chromosome 8CM051606.1=NC_080789.10
Chromosome 9CM051607.1=NC_080790.10
Chromosome 10CM051608.1=NC_080791.10
Chromosome 11CM051609.1=NC_080792.10
Chromosome 12CM051610.1=NC_080793.10
Chromosome 13CM051611.1=NC_080794.10
Chromosome 14CM051612.1=NC_080795.10
Chromosome 15CM051613.1=NC_080796.10
Chromosome 16CM051614.1=NC_080797.10
Chromosome 17CM051615.1=NC_080798.10
Chromosome 18CM051616.1=NC_080799.10
Chromosome XCM051617.1=NC_080800.10
Chromosome YCM051618.1=NC_080801.13
unplacedn/an/an/a10

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,468,345,093332,466,981,241150,204,1691810
Chromosome 1Assembled molecule243,997,0751243,988,950243,997,07570
Chromosome 2Assembled molecule222,427,7911222,326,768222,427,791140
Chromosome 3Assembled molecule207,471,0841207,444,233207,471,08470
Chromosome 4Assembled molecule170,163,1641170,160,059170,163,164110
Chromosome 5Assembled molecule159,605,6451159,268,557159,605,645100
Chromosome 6Assembled molecule156,028,0321156,027,436156,028,03220
Chromosome 7Assembled molecule150,204,1691150,146,215150,204,169110
Chromosome 8Assembled molecule142,999,9911142,996,891142,999,991110
Chromosome 9Assembled molecule141,813,3691141,810,592141,813,369120
Chromosome 10Assembled molecule115,744,4181115,628,110115,744,418180
Chromosome 11Assembled molecule95,678,116195,355,74195,678,11690
Chromosome 12Assembled molecule95,590,950195,571,18495,590,95060
Chromosome 13Assembled molecule92,698,642192,698,00992,698,64250
Chromosome 14Assembled molecule83,647,936183,625,38683,647,93630
Chromosome 15Assembled molecule75,977,291175,975,54575,977,29180
Chromosome 16Assembled molecule66,162,313166,154,89766,162,313100
Chromosome 17Assembled molecule62,726,519162,707,56862,726,519100
Chromosome 18Assembled molecule46,369,777146,367,97746,369,77760
Chromosome XAssembled molecule128,487,6511128,175,963128,487,651210
Chromosome YAllAssembled moleculeUnlocalized scaffolds10,040,4957,351,8102,688,68541310,040,4957,351,8102,688,6857,351,8107,351,8101,825,336000000
unplacedAssembled molecule510,66510510,66556,25700