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Source database (GenBank or RefSeq) File type

idAnaObli1_1.0

Organism name:

Anastrepha obliqua (flies)

Isolate:

idAnaObli1

Sex:

male

BioSample:

SAMN24809119

BioProject:

PRJNA796007

Submitter:

United States Department of Agriculture

Date:

2023/01/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_027943255.1 (latest)

RefSeq assembly accession:

GCF_027943255.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAPTHP01

Assembly method:

HiFiASM v. 0.16.1-r375

Expected final version:

yes

Genome coverage:

68x

Sequencing technology:

PacBio Sequel

IDs: 15504861 [UID] 39890558 [GenBank] 41865198 [RefSeq]

See Genome Information for Anastrepha obliqua

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027943255.1	≠	GCF_027943255.1	idAnaObli1_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	836,742,189
Total ungapped length	836,741,289
Gaps between scaffolds	0
Number of scaffolds	205
Scaffold N50	134,537,425
Scaffold L50	3
Number of contigs	214
Contig N50	92,569,129
Contig L50	4
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	205

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM051338.1	=	NC_072892.1	0
Chromosome 2	CM051339.1	=	NC_072893.1	0
Chromosome 3	CM051340.1	=	NC_072894.1	0
Chromosome 4	CM051341.1	=	NC_072895.1	0
Chromosome 5	CM051342.1	=	NC_072896.1	0
Chromosome 6	CM051343.1	=	NC_072897.1	0
unplaced	n/a	n/a	n/a	199

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	836,742,189	205	836,741,289	134,537,425	9
Chromosome 1	184,948,302	1	184,948,202	184,948,302	1
Chromosome 2	134,537,425	1	134,537,325	134,537,425	1
Chromosome 3	145,582,729	1	145,582,629	145,582,729	1
Chromosome 4	127,191,864	1	127,191,864	127,191,864	0
Chromosome 5	129,492,886	1	129,492,786	129,492,886	1
Chromosome 6	80,850,008	1	80,849,508	80,850,008	5
unplaced	34,138,975	199	34,138,975	3,116,827	0

Assembly

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idAnaObli1_1.0

See Genome Information for Anastrepha obliqua

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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