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ASM2792576v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 98E11
BioSample:
SAMD00562886
BioProject:
PRJDB14896
Submitter:
Kyushu University
Date:
2023/01/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_027925765.1 (latest)
RefSeq assembly accession:
GCF_027925765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.9
Genome coverage:
95x
Sequencing technology:
MinION

IDs: 15483251 [UID] 39812928 [GenBank] 42574928 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 274445 assemblies for this organism

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History (Show revision history)

Comment

Annotated by DFAST v.1.2.18 (https://dfast.nig.ac.jp)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/11/2023 07:38:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,142
CDSs (total)::6,002
Genes (coding)::5,682
CDSs (with protein)::5,682
Genes (RNA)::140
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::107
ncRNAs::11
Pseudo Genes (total)::320
CDSs (without protein)::320
Pseudo Genes (ambiguous residues)::0 of 320
Pseudo Genes (frameshifted)::115 of 320
Pseudo Genes (incomplete)::194 of 320
Pseudo Genes (internal stop)::78 of 320
Pseudo Genes (multiple problems)::61 of 320
Pseudo Genes (short protein)::3 of 320
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,965,160
Total ungapped length5,965,160
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027925775.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP027181.1=NZ_AP027181.1
Plasmid pO26_98E11_1AP027182.1=NZ_AP027182.1
Plasmid pO26_98E11_2AP027183.1=NZ_AP027183.1
Plasmid pO26_98E11_3AP027184.1=NZ_AP027184.1

Assembly statistics

MoleculeTotal
Length
All5,965,160
Chromosome 5,767,030
Plasmid pO26_98E11_199,281
Plasmid pO26_98E11_292,173
Plasmid pO26_98E11_36,676

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000459055.1Escherichia coli HVH 200 (4-4449924)claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000459055.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9276.0486.07
Best-match type98.9276.0486.07

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna