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RoL_Ddac_1.1

Organism name:
Dunckerocampus dactyliophorus (ringed pipefish)
Isolate:
RoL2022-P2
Sex:
male
BioSample:
SAMN31865020
BioProject:
PRJNA851781
Submitter:
University of Idaho at Moscow
Date:
2023/01/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027744805.2 (latest)
RefSeq assembly accession:
GCF_027744805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAPTFN01
Assembly method:
Hifiasm v. 0.16.1
Expected final version:
no
Genome coverage:
55.0x
Sequencing technology:
Pacbio HiFi; Phase Genomics Hi-C

IDs: 16185181 [UID] 41489688 [GenBank] 41793618 [RefSeq]

See Genome Information for Dunckerocampus dactyliophorus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

In March 2023 5 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length670,648,883
Total ungapped length670,648,603
Gaps between scaffolds0
Number of scaffolds157
Scaffold N5032,514,960
Scaffold L509
Number of contigs171
Contig N5026,519,775
Contig L5011
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)157

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027744985.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM050978.1=NC_072819.10
Chromosome 2CM050979.1=NC_072820.10
Chromosome 3CM050980.1=NC_072821.10
Chromosome 4CM050981.1=NC_072822.10
Chromosome 5CM050982.1=NC_072823.10
Chromosome 6CM050983.1=NC_072824.10
Chromosome 7CM050984.1=NC_072825.10
Chromosome 8CM050985.1=NC_072826.10
Chromosome 9CM050986.1=NC_072827.10
Chromosome 10CM050987.1=NC_072828.10
Chromosome 11CM050988.1=NC_072829.10
Chromosome 12CM050989.1=NC_072830.10
Chromosome 13CM050990.1=NC_072831.10
Chromosome 14CM050991.1=NC_072832.10
Chromosome 15CM050992.1=NC_072833.10
Chromosome 16CM050993.1=NC_072834.10
Chromosome 17CM050994.1=NC_072835.10
Chromosome 18CM050995.1=NC_072836.10
Chromosome 19CM050996.1=NC_072837.10
Chromosome 20CM050997.1=NC_072838.10
Chromosome 21CM050998.1=NC_072839.10
unplacedn/an/an/a136

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All670,648,883157670,648,60332,514,960140
Chromosome 151,887,073151,887,05351,887,07310
Chromosome 251,836,318151,836,29851,836,31810
Chromosome 339,860,951139,860,93139,860,95110
Chromosome 437,920,988137,920,96837,920,98810
Chromosome 534,470,409134,470,40934,470,40900
Chromosome 633,844,509133,844,48933,844,50910
Chromosome 732,977,772132,977,77232,977,77200
Chromosome 832,761,191132,761,19132,761,19100
Chromosome 932,514,960132,514,94032,514,96010
Chromosome 1032,008,796132,008,77632,008,79610
Chromosome 1131,557,025131,556,98531,557,02520
Chromosome 1230,796,809130,796,80930,796,80900
Chromosome 1330,794,313130,794,29330,794,31310
Chromosome 1430,196,473130,196,41330,196,47330
Chromosome 1528,255,146128,255,14628,255,14600
Chromosome 1625,333,025125,333,02525,333,02500
Chromosome 1724,283,049124,283,04924,283,04900
Chromosome 1822,121,542122,121,54222,121,54200
Chromosome 1920,760,892120,760,89220,760,89200
Chromosome 2019,397,776119,397,77619,397,77600
Chromosome 2117,804,902117,804,88217,804,90210
unplaced9,264,9641369,264,96490,97100