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Source database (GenBank or RefSeq) File type

ASM2759593v1

Organism name:: Enterobacter kobei (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: S18_CRE18
BioSample:: SAMN16387637
BioProject:: PRJNA667445
Submitter:: University of Alabama in Huntsville
Date:: 2023/01/09
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_027595935.1 (latest)
RefSeq assembly accession:: GCF_027595935.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. v0.4.7
Expected final version:: yes
Genome coverage:: 554x
Sequencing technology:: Illumina NextSeq; PacBio Sequel

IDs: 15255711 [UID] 39301908 [GenBank] 39494028 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027595935.1	=	GCF_027595935.1	ASM2759593v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/22/2024 01:40:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,770
CDSs (total)::4,655
Genes (coding)::4,538
CDSs (with protein)::4,538
Genes (RNA)::115
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::82
ncRNAs::8
Pseudo Genes (total)::117
CDSs (without protein)::117
Pseudo Genes (ambiguous residues)::0 of 117
Pseudo Genes (frameshifted)::49 of 117
Pseudo Genes (incomplete)::70 of 117
Pseudo Genes (internal stop)::22 of 117
Pseudo Genes (multiple problems)::21 of 117
Pseudo Genes (short protein)::1 of 117
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,952,602
Total ungapped length	4,952,602
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP075345.1	=	NZ_CP075345.1
Plasmid pCRE18_1	CP075346.1	=	NZ_CP075346.1
Plasmid pCRE18_2	CP075347.1	=	NZ_CP075347.1

Molecule	Total Length
All	4,952,602
Chromosome	4,798,030
Plasmid pCRE18_1	94,151
Plasmid pCRE18_2	60,421

	ANI	Query coverage	Subject coverage
Declared type	99.18	86.61	87.06
Best-match type	99.18	86.61	87.06

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ASM2759593v1

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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