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Source database (GenBank or RefSeq) File type

aBomBom1.pri

Organism name:

Bombina bombina (fire-bellied toad)

Isolate:

aBomBom1

Sex:

male

BioSample:

SAMN32378350

BioProject:

PRJNA915412

Submitter:

Vertebrate Genomes Project

Date:

2023/01/09

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_027579735.1 (latest)

RefSeq assembly accession:

GCF_027579735.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAQBIC01

Assembly method:

FALCON v. 1.8.1; FALCON unzip v. 1.3.7; purge_dups v. 1.2.3; scaff10X v. 4.2a; Bionano Solve DLS v. 3.6.1_11162020; salsa v. 2.2; longranger Align v. 2.2.2; gcpp v. 2.0.2; freebayes polishing v. 1.3.2; gEVAL manual curation v. 2022-04-08

Expected final version:

Genome coverage:

92.75x

Sequencing technology:

PacBio Sequel I CLR

Linked assembly:

GCA_027579415.1 (alternate pseudohaplotype of diploid)

IDs: 15255871 [UID] 39302208 [GenBank] 39806878 [RefSeq]

See Genome Information for Bombina bombina

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_027579735.1	≠	GCF_027579735.1	aBomBom1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	10,019,663,791
Total ungapped length	9,820,765,778
Gaps between scaffolds	0
Number of scaffolds	2,467
Scaffold N50	1,241,340,601
Scaffold L50	4
Number of contigs	9,446
Contig N50	3,759,931
Contig L50	737
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	2,467

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM050569.1	=	NC_069499.1	0
Chromosome 2	CM050570.1	=	NC_069500.1	0
Chromosome 3	CM050571.1	=	NC_069501.1	0
Chromosome 4	CM050572.1	=	NC_069502.1	0
Chromosome 5	CM050573.1	=	NC_069503.1	0
Chromosome 6	CM050574.1	=	NC_069504.1	0
Chromosome 7	CM050575.1	=	NC_069505.1	0
Chromosome 8	CM050576.1	=	NC_069506.1	0
Chromosome 9	CM050577.1	=	NC_069507.1	0
Chromosome 10	CM050578.1	=	NC_069508.1	0
Chromosome 11	CM050579.1	=	NC_069509.1	0
Chromosome 12	CM050580.1	=	NC_069510.1	0
unplaced	n/a	n/a	n/a	2,455

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	10,019,663,791	2,467	9,820,765,778	1,241,340,601	6,979
Chromosome 1	1,601,664,463	1	1,574,203,646	1,601,664,463	988
Chromosome 2	1,450,603,269	1	1,428,177,995	1,450,603,269	800
Chromosome 3	1,296,922,325	1	1,276,171,123	1,296,922,325	795
Chromosome 4	1,241,340,601	1	1,217,370,590	1,241,340,601	822
Chromosome 5	1,167,632,593	1	1,139,034,627	1,167,632,593	786
Chromosome 6	1,160,268,632	1	1,139,346,317	1,160,268,632	755
Chromosome 7	643,478,974	1	620,259,609	643,478,974	613
Chromosome 8	354,776,354	1	349,665,902	354,776,354	230
Chromosome 9	291,274,852	1	282,883,412	291,274,852	285
Chromosome 10	220,236,004	1	215,688,367	220,236,004	170
Chromosome 11	202,747,905	1	194,950,463	202,747,905	189
Chromosome 12	161,021,261	1	157,275,047	161,021,261	172
unplaced	227,696,558	2,455	225,738,680	153,231	374

Assembly

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aBomBom1.pri

See Genome Information for Bombina bombina

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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