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ASM2434658v1

Organism name:
Streptococcus toyakuensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: CCUG:75492; JCM:34623
Infraspecific name:
Strain: TP1632
BioSample:
SAMD00286438
BioProject:
PRJDB11368
Submitter:
Tokyo University of Pharmacy and Life Sciences
Date:
2022/04/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_024346585.1 (latest)
RefSeq assembly accession:
GCF_024346585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v.0.4.7.
Genome coverage:
1358x
Sequencing technology:
PacBio SMART;DNB Seq-G400

IDs: 13322481 [UID] 34789458 [GenBank] 36399408 [RefSeq]

See Genome Information for Streptococcus toyakuensis

History (Show revision history)

Comment

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/


The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/12/2023 02:05:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,046
CDSs (total)::1,970
Genes (coding)::1,910
CDSs (with protein)::1,910
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::30 of 60
Pseudo Genes (incomplete)::29 of 60
Pseudo Genes (internal stop)::12 of 60
Pseudo Genes (multiple problems)::9 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,055,023
Total ungapped length2,055,023
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024346595.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP024523.1=NZ_AP024523.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,055,023

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus toyakuensisStreptococcus toyakuensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047825.1Streptococcus mitissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.4577.0284.69

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected