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ASM2430068v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:BAA-2196
Infraspecific name:
Serotype: O26:H11
Infraspecific name:
Strain: 2003-3014
BioSample:
SAMN24907326
BioProject:
PRJNA794938
Submitter:
The University of Texas at San Antonio
Date:
2022/07/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_024300685.1 (latest)
RefSeq assembly accession:
GCF_024300685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. Galaxy Version 0.4.8.0
Expected final version:
yes
Genome coverage:
296x
Sequencing technology:
Oxford Nanopore MiniION; Illumina MiSeq

IDs: 13300881 [UID] 34741658 [GenBank] 34774088 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 274145 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/27/2023 05:39:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,128
CDSs (total)::5,990
Genes (coding)::5,666
CDSs (with protein)::5,666
Genes (RNA)::138
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::105
ncRNAs::11
Pseudo Genes (total)::324
CDSs (without protein)::324
Pseudo Genes (ambiguous residues)::0 of 324
Pseudo Genes (frameshifted)::132 of 324
Pseudo Genes (incomplete)::191 of 324
Pseudo Genes (internal stop)::73 of 324
Pseudo Genes (multiple problems)::66 of 324
Pseudo Genes (short protein)::3 of 324
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,955,072
Total ungapped length5,955,072
Total number of chromosomes and plasmids6

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_024300695.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP101292.1=NZ_CP101292.1
Plasmid pCol-O26-3CP101294.1=NZ_CP101294.1
Plasmid pO26-1CP101295.1=NZ_CP101295.1
Plasmid pO26-2CP101296.1=NZ_CP101296.1
Plasmid pO26-4CP101297.1=NZ_CP101297.1
Plasmid pCol156-O26-5CP101293.1=NZ_CP101293.1

Assembly statistics

MoleculeTotal
Length
All5,955,072
Chromosome 5,840,137
Plasmid pCol-O26-36,673
Plasmid pO26-190,123
Plasmid pO26-26,741
Plasmid pO26-46,222
Plasmid pCol156-O26-55,176

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000459055.1Escherichia coli HVH 200 (4-4449924)claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000459055.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9176.1286.01
Best-match type98.9176.1286.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna