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ASM2392060v1

Organism name:
Enterobacter cloacae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EFN743
BioSample:
SAMN26208495
BioProject:
PRJNA473419
Submitter:
Tokyo Medical and Dental University
Date:
2022/06/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023920605.1 (latest)
RefSeq assembly accession:
GCF_023920605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler hybrid assembly v. 0.4.8
Expected final version:
yes
Genome coverage:
159.0x
Sequencing technology:
Illumina MiniSeq; Oxford Nanopore

IDs: 13067781 [UID] 34176298 [GenBank] 34307828 [RefSeq]

See Genome Information for Enterobacter cloacae

Pathogen Detection Resources

There are 1114 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_023920605.1-RS_2024_07_04
Annotation Date::07/04/2024 04:58:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,246
CDSs (total)::5,132
Genes (coding)::5,040
CDSs (with protein)::5,040
Genes (RNA)::114
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::5
Pseudo Genes (total)::92
CDSs (without protein)::92
Pseudo Genes (ambiguous residues)::0 of 92
Pseudo Genes (frameshifted)::31 of 92
Pseudo Genes (incomplete)::68 of 92
Pseudo Genes (internal stop)::13 of 92
Pseudo Genes (multiple problems)::15 of 92
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,407,505
Total ungapped length5,407,505
Total number of chromosomes and plasmids4

Supplemental Content

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Assembly Information

Related Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023920615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP092635.1=NZ_CP092635.1
Plasmid p2CP092637.1=NZ_CP092637.1
Plasmid p3CP092638.1=NZ_CP092638.1
Plasmid p743-OXA-181CP092636.1=NZ_CP092636.1

Assembly statistics

MoleculeTotal
Length
All5,407,505
Chromosome 5,350,777
Plasmid p29,294
Plasmid p32,155
Plasmid p743-OXA-18145,279

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacaeEnterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013376815.1Enterobacter cloacaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013376815.1Enterobacter cloacaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9187.3284.28
Best-match type98.9187.3284.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna