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ASM2354731v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Ek72
BioSample:
SAMN22612881
BioProject:
PRJNA775676
Submitter:
Shenzhen People's Hospital
Date:
2022/05/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023547315.1 (latest)
RefSeq assembly accession:
GCF_023547315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.8
Expected final version:
no
Genome coverage:
110.0x
Sequencing technology:
Oxford Nanopore

IDs: 12837911 [UID] 33531028 [GenBank] 33590368 [RefSeq]

See Genome Information for Enterobacter kobei

There are 619 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/30/2023 05:40:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,835
CDSs (total)::4,720
Genes (coding)::4,613
CDSs (with protein)::4,613
Genes (RNA)::115
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::5
Pseudo Genes (total)::107
CDSs (without protein)::107
Pseudo Genes (ambiguous residues)::0 of 107
Pseudo Genes (frameshifted)::36 of 107
Pseudo Genes (incomplete)::69 of 107
Pseudo Genes (internal stop)::18 of 107
Pseudo Genes (multiple problems)::14 of 107
Pseudo Genes (short protein)::1 of 107
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,014,089
Total ungapped length5,014,089
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023547325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP088229.1=NZ_CP088229.1
Plasmid pEk72-1CP088230.1=NZ_CP088230.1
Plasmid pEk72-2CP088231.1=NZ_CP088231.1
Plasmid pEk72-3CP088232.1=NZ_CP088232.1

Assembly statistics

MoleculeTotal
Length
All5,014,089
Chromosome 4,820,180
Plasmid pEk72-1137,379
Plasmid pEk72-22,495
Plasmid pEk72-354,035

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2087.0088.53
Best-match type99.2087.0088.53

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna