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ASM2333367v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 11743-yvys
BioSample:
SAMN21379547
BioProject:
PRJNA762162
Submitter:
Sir Run Run Shaw Hospital
Date:
2022/04/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_023333675.1 (latest)
RefSeq assembly accession:
GCF_023333675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.8
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Oxford Nanopore MinION

IDs: 12704041 [UID] 33225318 [GenBank] 33261248 [RefSeq]

See Genome Information for Enterobacter kobei

There are 619 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_023333675.1-RS_2024_04_06
Annotation Date::04/06/2024 07:15:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,381
CDSs (total)::5,264
Genes (coding)::5,129
CDSs (with protein)::5,129
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::7
Pseudo Genes (total)::135
CDSs (without protein)::135
Pseudo Genes (ambiguous residues)::0 of 135
Pseudo Genes (frameshifted)::39 of 135
Pseudo Genes (incomplete)::101 of 135
Pseudo Genes (internal stop)::17 of 135
Pseudo Genes (multiple problems)::18 of 135
Pseudo Genes (short protein)::1 of 135
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,494,734
Total ungapped length5,494,734
Total number of chromosomes and plasmids5

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023333685.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP083862.1=NZ_CP083862.1
Plasmid p11743_1CP083863.1=NZ_CP083863.1
Plasmid p11743_2CP083864.1=NZ_CP083864.1
Plasmid p11743_3CP083865.1=NZ_CP083865.1
Plasmid p11743_4CP083866.1=NZ_CP083866.1

Assembly statistics

MoleculeTotal
Length
All5,494,734
Chromosome 5,142,182
Plasmid p11743_1276,053
Plasmid p11743_255,862
Plasmid p11743_317,041
Plasmid p11743_43,596

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3780.7990.09
Best-match type99.3780.7990.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna