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mDicBic1.mat.cur

Organism name:
Diceros bicornis minor (black rhinoceros)
Isolate:
mBicDic1
Sex:
female
BioSample:
SAMN22047685
BioProject:
PRJNA773944
Submitter:
Vertebrate Genomes Project
Date:
2021/11/10
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020826845.1 (latest)
RefSeq assembly accession:
GCF_020826845.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAJIAY01
Assembly method:
Trio HiFiasm v. 0.15.1-r329; Bionano Solve v. 3.6.1_11162020; Salsa v. 2.2
Expected final version:
no
Genome coverage:
30.57x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Illumina HiSeq; Arima Genomics Hi-C v2
Linked assembly:
GCA_020826835.1 (alternate pseudohaplotype of diploid)

IDs: 11421601 [UID] 30073958 [GenBank] 45523168 [RefSeq]

See Genome Information for Diceros bicornis

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,005,535,620
Total ungapped length3,004,166,759
Gaps between scaffolds0
Number of scaffolds1,076
Scaffold N5065,026,825
Scaffold L5017
Number of contigs1,291
Contig N5028,468,213
Contig L5031
Total number of chromosomes and plasmids43
Number of component sequences (WGS or clone)1,076

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_020826855.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM036946.1=NC_080740.18
Chromosome 2CM036947.1=NC_080741.18
Chromosome 3CM036948.1=NC_080742.12
Chromosome 4CM036949.1=NC_080743.10
Chromosome 5CM036950.1=NC_080744.11
Chromosome 6CM036951.1=NC_080745.11
Chromosome 7CM036952.1=NC_080746.13
Chromosome 8CM036953.1=NC_080747.13
Chromosome 9CM036954.1=NC_080748.10
Chromosome 10CM036955.1=NC_080749.12
Chromosome 11CM036956.1=NC_080750.10
Chromosome 12CM036957.1=NC_080751.12
Chromosome 13CM036958.1=NC_080752.11
Chromosome 14CM036959.1=NC_080753.11
Chromosome 15CM036960.1=NC_080754.12
Chromosome 16CM036961.1=NC_080755.11
Chromosome 17CM036962.1=NC_080756.11
Chromosome 18CM036963.1=NC_080757.11
Chromosome 19CM036964.1=NC_080758.12
Chromosome 20CM036965.1=NC_080759.12
Chromosome 21CM036966.1=NC_080760.11
Chromosome 22CM036967.1=NC_080761.11
Chromosome 23CM036968.1=NC_080762.10
Chromosome 24CM036969.1=NC_080763.11
Chromosome 25CM036970.1=NC_080764.10
Chromosome 26CM036971.1=NC_080765.11
Chromosome 27CM036972.1=NC_080766.12
Chromosome 28CM036973.1=NC_080767.12
Chromosome 29CM036974.1=NC_080768.14
Chromosome 30CM036975.1=NC_080769.18
Chromosome 31CM036976.1=NC_080770.10
Chromosome 32CM036977.1=NC_080771.12
Chromosome 33CM036978.1=NC_080772.11
Chromosome 34CM036979.1=NC_080773.12
Chromosome 35CM036980.1=NC_080774.12
Chromosome 36CM036981.1=NC_080775.10
Chromosome 37CM036982.1=NC_080776.11
Chromosome 38CM036983.1=NC_080777.10
Chromosome 39CM036984.1=NC_080778.12
Chromosome 40CM036985.1=NC_080779.11
Chromosome 41CM036986.1=NC_080780.10
Chromosome XCM036987.1=NC_080781.10
unplacedn/an/an/a961

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,005,519,2091,0753,004,150,34865,026,8252150
Chromosome 1AllAssembled moleculeUnlocalized scaffolds121,588,26595,316,61426,271,651918121,587,50095,316,40126,271,09995,316,61495,316,6147,942,775725000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds113,059,80797,251,58815,808,219918113,056,63397,248,47915,808,15497,251,58897,251,5883,807,783835000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds108,480,717103,578,5184,902,199312108,479,866103,577,6934,902,173103,578,518103,578,5183,287,636642000
Chromosome 4Assembled molecule103,330,3661103,302,981103,330,36620
Chromosome 5AllAssembled moleculeUnlocalized scaffolds99,703,20699,179,044524,16221199,686,42699,162,264524,16299,179,04499,179,044524,162660000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds96,778,20095,942,138836,06221196,774,07395,938,011836,06295,942,13895,942,138836,062880000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds91,697,78988,207,4413,490,34841391,691,16888,200,8203,490,34888,207,44188,207,4411,259,977660000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds91,398,75987,595,6493,803,11041391,383,10487,580,4943,802,61087,595,64987,595,6492,679,753211000
Chromosome 9Assembled molecule87,869,991187,866,80187,869,99150
Chromosome 10AllAssembled moleculeUnlocalized scaffolds86,888,67485,556,7841,331,89031286,884,67585,552,7851,331,89085,556,78485,556,784706,006220000
Chromosome 11Assembled molecule82,627,431182,627,39282,627,43130
Chromosome 12AllAssembled moleculeUnlocalized scaffolds80,732,27478,375,9302,356,34431280,732,04878,375,7302,356,31878,375,93078,375,9301,583,827312000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds80,262,28757,221,16623,041,12121180,141,58257,100,53923,041,04357,221,16657,221,16623,041,12117116000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds71,606,16670,756,208849,95821171,591,29270,741,334849,95870,756,20870,756,208849,958550000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds71,509,36167,717,1713,792,19031271,509,09667,716,9193,792,17767,717,17167,717,1712,976,711651000
Chromosome 16AllAssembled moleculeUnlocalized scaffolds70,746,74368,396,2332,350,51021170,739,64768,389,1502,350,49768,396,23368,396,2332,350,510431000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds66,056,91665,026,8251,030,09121166,017,72664,987,6351,030,09165,026,82565,026,8251,030,091220000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds65,947,24864,962,109985,13921165,941,74864,956,609985,13964,962,10964,962,109985,139110000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds65,362,60463,269,8912,092,71331265,354,55863,261,8452,092,71363,269,89163,269,8911,306,234990000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds63,971,75862,459,5071,512,25131263,971,61962,459,3811,512,23862,459,50762,459,5071,027,568431000
Chromosome 21AllAssembled moleculeUnlocalized scaffolds62,798,48057,594,8285,203,65221162,798,44157,594,8025,203,63957,594,82857,594,8285,203,652321000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds61,188,45159,828,9021,359,54921161,187,71259,828,1631,359,54959,828,90259,828,9021,359,549550000
Chromosome 23Assembled molecule59,654,472159,654,47259,654,47200
Chromosome 24AllAssembled moleculeUnlocalized scaffolds53,073,09952,041,9751,031,12421153,071,35752,040,2461,031,11152,041,97552,041,9751,031,124541000
Chromosome 25Assembled molecule52,421,047152,421,00852,421,04730
Chromosome 26AllAssembled moleculeUnlocalized scaffolds49,652,95548,312,0881,340,86721149,647,42648,306,5591,340,86748,312,08848,312,0881,340,867220000
Chromosome 27AllAssembled moleculeUnlocalized scaffolds48,866,90446,415,3792,451,52531248,863,51646,412,1912,451,32546,415,37946,415,3791,707,143321000
Chromosome 28AllAssembled moleculeUnlocalized scaffolds47,329,93744,549,3412,780,59631247,329,22444,548,6282,780,59644,549,34144,549,3412,134,276330000
Chromosome 29AllAssembled moleculeUnlocalized scaffolds45,819,59443,004,8192,814,77551445,819,21343,004,4382,814,77543,004,81943,004,819741,123220000
Chromosome 30AllAssembled moleculeUnlocalized scaffolds45,037,01015,804,43329,232,57791844,506,46115,274,43629,232,0259,411,02215,804,4335,876,0211385000
Chromosome 31Assembled molecule44,523,139144,519,91344,523,13970
Chromosome 32AllAssembled moleculeUnlocalized scaffolds43,471,89039,344,0274,127,86331243,471,87739,344,0144,127,86339,344,02739,344,0272,109,593110000
Chromosome 33AllAssembled moleculeUnlocalized scaffolds39,589,24538,899,464689,78121139,589,24538,899,464689,78138,899,46438,899,464689,781000000
Chromosome 34AllAssembled moleculeUnlocalized scaffolds39,191,20538,362,587828,61831239,177,46038,348,842828,61838,362,58738,362,587598,616440000
Chromosome 35AllAssembled moleculeUnlocalized scaffolds37,239,64434,809,0212,430,62331237,239,21834,808,6082,430,61034,809,02134,809,0211,559,401431000
Chromosome 36Assembled molecule37,100,191137,100,17837,100,19110
Chromosome 37AllAssembled moleculeUnlocalized scaffolds33,522,66333,062,393460,27021133,522,46333,062,193460,27033,062,39333,062,393460,270110000
Chromosome 38Assembled molecule33,299,060133,298,06033,299,06010
Chromosome 39AllAssembled moleculeUnlocalized scaffolds30,534,38428,296,1402,238,24431230,534,38428,296,1402,238,24428,296,14028,296,1401,691,268000000
Chromosome 40AllAssembled moleculeUnlocalized scaffolds21,471,60620,670,798800,80821121,471,08020,670,272800,80820,670,79820,670,798800,808330000
Chromosome 41Assembled molecule16,690,536116,690,45516,690,53610
Chromosome XAssembled molecule139,927,9591139,677,383139,927,959130
unplacedAssembled molecule243,497,176961243,219,867706,739340
MoleculeTotal
Length
Mitochondrion MT16,411