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Source database (GenBank or RefSeq) File type

ASM2054678v1

Organism name:: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 13939 substr. S2
BioSample:: SAMN11332820
BioProject:: PRJNA530377
Submitter:: Ruder Boskovic Institute
Date:: 2021/10/25
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_020546785.1 (latest)
RefSeq assembly accession:: GCF_020546785.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Canu v. 1.7
Expected final version:: yes
Genome coverage:: 115.0x
Sequencing technology:: PacBio RSII

IDs: 11278841 [UID] 29724518 [GenBank] 29826568 [RefSeq]

See Genome Information for Deinococcus radiodurans

Pathogen Detection Resources

There are 17 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020546785.1	=	GCF_020546785.1	ASM2054678v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Molecular Microbiology Laboratory, Ruder Boskovic Institute
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_020546785.1-RS_2024_03_30
Annotation Date::03/30/2024 06:16:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,173
CDSs (total)::3,111
Genes (coding)::3,068
CDSs (with protein)::3,068
Genes (RNA)::62
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::43
CDSs (without protein)::43
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::19 of 43
Pseudo Genes (incomplete)::22 of 43
Pseudo Genes (internal stop)::2 of 43
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,229,980
Total ungapped length	3,229,980
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	CP038979.1	=	NZ_CP038979.1
Chromosome II	CP038980.1	=	NZ_CP038980.1
Plasmid pCP1	CP038982.1	=	NZ_CP038982.1
Plasmid pMP1	CP038981.1	=	NZ_CP038981.1

Molecule	Total Length
All	3,229,980
Chromosome I	2,645,322
Chromosome II	360,746
Plasmid pCP1	46,549
Plasmid pMP1	177,363

	ANI	Query coverage	Subject coverage
Declared type	99.99	99.07	100.00
Best-match type	99.99	99.07	100.00

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ASM2054678v1

See Genome Information for Deinococcus radiodurans

Pathogen Detection Resources

There are 17 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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