Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM2008510v1

Organism name:

Siniperca chuatsi (mandarin fish)

Isolate:

FFG_IHB_CAS

Sex:

female

BioSample:

SAMN19768590

BioProject:

PRJNA738969

Submitter:

Chinese Academy of Sciences

Date:

2021/09/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_020085105.1 (latest)

RefSeq assembly accession:

GCF_020085105.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAHXMP01

Assembly method:

wtdbg2 v. 2.5

Expected final version:

yes

Genome coverage:

140x

Sequencing technology:

Illumina HiSeq; Oxford Nanopore

IDs: 10987621 [UID] 29026848 [GenBank] 29146328 [RefSeq]

See Genome Information for Siniperca chuatsi

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020085105.1	≠	GCF_020085105.1	ASM2008510v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	718,820,513
Total ungapped length	718,811,213
Gaps between scaffolds	0
Number of scaffolds	65
Scaffold N50	30,013,189
Scaffold L50	11
Number of contigs	158
Contig N50	20,478,450
Contig L50	14
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	65

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM034670.1	=	NC_058042.1	0
Linkage Group LG2	CM034671.1	=	NC_058043.1	0
Linkage Group LG3	CM034672.1	=	NC_058044.1	0
Linkage Group LG4	CM034673.1	=	NC_058045.1	0
Linkage Group LG5	CM034674.1	=	NC_058046.1	0
Linkage Group LG6	CM034675.1	=	NC_058047.1	0
Linkage Group LG7	CM034676.1	=	NC_058048.1	0
Linkage Group LG8	CM034677.1	=	NC_058049.1	0
Linkage Group LG9	CM034678.1	=	NC_058050.1	0
Linkage Group LG10	CM034679.1	=	NC_058051.1	0
Linkage Group LG11	CM034680.1	=	NC_058052.1	0
Linkage Group LG12	CM034681.1	=	NC_058053.1	0
Linkage Group LG13	CM034682.1	=	NC_058054.1	0
Linkage Group LG14	CM034683.1	=	NC_058055.1	0
Linkage Group LG15	CM034684.1	=	NC_058056.1	0
Linkage Group LG16	CM034685.1	=	NC_058057.1	0
Linkage Group LG17	CM034686.1	=	NC_058058.1	0
Linkage Group LG18	CM034687.1	=	NC_058059.1	0
Linkage Group LG19	CM034688.1	=	NC_058060.1	0
Linkage Group LG20	CM034689.1	=	NC_058061.1	0
Linkage Group LG21	CM034690.1	=	NC_058062.1	0
Linkage Group LG22	CM034691.1	=	NC_058063.1	0
Linkage Group LG23	CM034692.1	=	NC_058064.1	0
Linkage Group LG24	CM034693.1	=	NC_058065.1	0
unplaced	n/a	n/a	n/a	40

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	718,804,017	64	718,794,717	30,013,189	93
Linkage Group LG1	38,123,097	1	38,122,997	38,123,097	1
Linkage Group LG2	35,708,939	1	35,708,639	35,708,939	3
Linkage Group LG3	34,942,617	1	34,942,217	34,942,617	4
Linkage Group LG4	33,507,167	1	33,506,767	33,507,167	4
Linkage Group LG5	33,325,937	1	33,325,637	33,325,937	3
Linkage Group LG6	33,006,957	1	33,006,757	33,006,957	2
Linkage Group LG7	32,472,923	1	32,472,623	32,472,923	3
Linkage Group LG8	31,750,086	1	31,749,686	31,750,086	4
Linkage Group LG9	31,681,624	1	31,681,224	31,681,624	4
Linkage Group LG10	31,412,928	1	31,412,428	31,412,928	5
Linkage Group LG11	30,013,189	1	30,013,089	30,013,189	1
Linkage Group LG12	29,970,715	1	29,970,615	29,970,715	1
Linkage Group LG13	29,881,321	1	29,880,821	29,881,321	5
Linkage Group LG14	29,571,026	1	29,570,826	29,571,026	2
Linkage Group LG15	29,484,278	1	29,484,078	29,484,278	2
Linkage Group LG16	29,110,542	1	29,110,142	29,110,542	4
Linkage Group LG17	28,762,557	1	28,761,957	28,762,557	6
Linkage Group LG18	28,316,384	1	28,316,184	28,316,384	2
Linkage Group LG19	27,219,361	1	27,218,361	27,219,361	10
Linkage Group LG20	26,809,803	1	26,809,503	26,809,803	3
Linkage Group LG21	25,395,102	1	25,394,302	25,395,102	8
Linkage Group LG22	24,671,900	1	24,671,300	24,671,900	6
Linkage Group LG23	23,668,553	1	23,668,453	23,668,553	1
Linkage Group LG24	19,095,618	1	19,094,718	19,095,618	9
unplaced	901,393	40	901,393	28,223	0

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

ASM2008510v1

See Genome Information for Siniperca chuatsi

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear