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ASM1933160v1

Organism name:
Mucilaginibacter sp. 21P (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 21P
BioSample:
SAMN16392370
BioProject:
PRJNA667924
Submitter:
Universidad de La Frontera
Date:
2021/07/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_019331605.1 (latest)
RefSeq assembly accession:
GCF_019331605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. v0.4.7
Expected final version:
yes
Genome coverage:
64.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore MinION

IDs: 10563331 [UID] 28015558 [GenBank] 28067448 [RefSeq]

See Genome Information for Mucilaginibacter sp. 21P

History (Show revision history)

Comment

Bacteria and source DNA available from Soil microbiome and biogeochemistry laboratory, Luiz de Queiroz College of Agriculture (ESALQ), University of Sao Paulo.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/07/2023 01:00:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,224
CDSs (total)::4,167
Genes (coding)::4,154
CDSs (with protein)::4,154
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::13
CDSs (without protein)::13
Pseudo Genes (ambiguous residues)::0 of 13
Pseudo Genes (frameshifted)::5 of 13
Pseudo Genes (incomplete)::6 of 13
Pseudo Genes (internal stop)::3 of 13
Pseudo Genes (multiple problems)::1 of 13
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,739,655
Total ungapped length4,739,655
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_019331615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP063061.1=NZ_CP063061.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,739,655

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mucilaginibacter sp. 21PMucilaginibacter sp. 21P

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007846095.1Mucilaginibacter achroorhodeustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.9582.7091.63

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna