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Source database (GenBank or RefSeq) File type

SWU_Hwy_1.0

Organism name:

Hemibagrus wyckioides (bony fishes)

Isolate:

EC202008001

Sex:

female

BioSample:

SAMN18644987

BioProject:

PRJNA720277

Submitter:

Southwest University

Date:

2021/07/06

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_019097595.1 (latest)

RefSeq assembly accession:

GCF_019097595.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAHKSW01

Assembly method:

Nextdenovo v. 2.4.0

Expected final version:

Genome coverage:

104.0x

Sequencing technology:

Oxford Nanopore PromethION; PacBio RSII

IDs: 10437741 [UID] 27714668 [GenBank] 45271668 [RefSeq]

See Genome Information for Hemibagrus wyckioides

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019097595.1	≠	GCF_019097595.1	SWU_Hwy_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	789,816,092
Total ungapped length	789,805,392
Gaps between scaffolds	0
Number of scaffolds	73
Scaffold N50	26,010,843
Scaffold L50	13
Number of contigs	180
Contig N50	21,700,000
Contig L50	15
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	73

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG01	CM032594.1	=	NC_080710.1	0
Linkage Group LG02	CM032595.1	=	NC_080711.1	0
Linkage Group LG03	CM032596.1	=	NC_080712.1	0
Linkage Group LG04	CM032597.1	=	NC_080713.1	0
Linkage Group LG05	CM032598.1	=	NC_080714.1	0
Linkage Group LG06	CM032599.1	=	NC_080715.1	0
Linkage Group LG07	CM032600.1	=	NC_080716.1	0
Linkage Group LG08	CM032601.1	=	NC_080717.1	0
Linkage Group LG09	CM032602.1	=	NC_080718.1	0
Linkage Group LG10	CM032603.1	=	NC_080719.1	0
Linkage Group LG11	CM032604.1	=	NC_080720.1	0
Linkage Group LG12	CM032605.1	=	NC_080721.1	0
Linkage Group LG13	CM032606.1	=	NC_080722.1	0
Linkage Group LG14	CM032607.1	=	NC_080723.1	0
Linkage Group LG15	CM032608.1	=	NC_080724.1	0
Linkage Group LG16	CM032609.1	=	NC_080725.1	0
Linkage Group LG17	CM032610.1	=	NC_080726.1	0
Linkage Group LG18	CM032611.1	=	NC_080727.1	0
Linkage Group LG19	CM032612.1	=	NC_080728.1	0
Linkage Group LG20	CM032613.1	=	NC_080729.1	0
Linkage Group LG21	CM032614.1	=	NC_080730.1	0
Linkage Group LG22	CM032615.1	=	NC_080731.1	0
Linkage Group LG23	CM032616.1	=	NC_080732.1	0
Linkage Group LG24	CM032617.1	=	NC_080733.1	0
Linkage Group LG25	CM032618.1	=	NC_080734.1	0
Linkage Group LG26	CM032619.1	=	NC_080735.1	0
Linkage Group LG27	CM032620.1	=	NC_080736.1	0
Linkage Group LG28	CM032621.1	=	NC_080737.1	0
Linkage Group LG29	CM032622.1	=	NC_080738.1	0
unplaced	n/a	n/a	n/a	43

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	789,799,567	72	789,788,867	26,010,843	107
Linkage Group LG01	35,260,961	1	35,260,361	35,260,961	6
Linkage Group LG02	26,508,201	1	26,507,701	26,508,201	5
Linkage Group LG03	35,035,825	1	35,035,625	35,035,825	2
Linkage Group LG04	33,136,307	1	33,136,007	33,136,307	3
Linkage Group LG05	30,390,517	1	30,390,217	30,390,517	3
Linkage Group LG06	46,190,937	1	46,190,337	46,190,937	6
Linkage Group LG07	34,928,531	1	34,927,831	34,928,531	7
Linkage Group LG08	29,552,090	1	29,551,790	29,552,090	3
Linkage Group LG09	31,078,839	1	31,078,239	31,078,839	6
Linkage Group LG10	26,000,100	1	26,000,000	26,000,100	1
Linkage Group LG11	34,707,540	1	34,707,240	34,707,540	3
Linkage Group LG12	17,012,469	1	17,012,269	17,012,469	2
Linkage Group LG13	27,045,722	1	27,045,622	27,045,722	1
Linkage Group LG14	26,010,843	1	26,010,643	26,010,843	2
Linkage Group LG15	24,206,693	1	24,206,193	24,206,693	5
Linkage Group LG16	24,083,722	1	24,083,622	24,083,722	1
Linkage Group LG17	26,109,970	1	26,109,670	26,109,970	3
Linkage Group LG18	24,815,393	1	24,815,393	24,815,393	0
Linkage Group LG19	24,370,955	1	24,370,555	24,370,955	4
Linkage Group LG20	22,209,775	1	22,209,275	22,209,775	5
Linkage Group LG21	21,584,138	1	21,583,638	21,584,138	5
Linkage Group LG22	23,013,735	1	23,013,235	23,013,735	5
Linkage Group LG23	20,899,533	1	20,899,033	20,899,533	5
Linkage Group LG24	21,143,276	1	21,142,776	21,143,276	5
Linkage Group LG25	21,146,016	1	21,145,816	21,146,016	2
Linkage Group LG26	22,787,324	1	22,786,624	22,787,324	7
Linkage Group LG27	20,845,214	1	20,844,914	20,845,214	3
Linkage Group LG28	20,838,880	1	20,838,580	20,838,880	3
Linkage Group LG29	20,683,548	1	20,683,148	20,683,548	4
unplaced	18,202,513	43	18,202,513	486,372	0

Assembly

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SWU_Hwy_1.0

See Genome Information for Hemibagrus wyckioides

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear