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Source database (GenBank or RefSeq) File type

C.illinoinensisPawnee_v1

Organism name:

Carya illinoinensis (pecan)

Infraspecific name:

Cultivar: Pawnee

BioSample:

SAMN16882287

BioProject:

PRJNA680556

Submitter:

DOE Joint Genome Institute

Date:

2021/06/03

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_018687715.1 (latest)

RefSeq assembly accession:

GCF_018687715.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JAEDWW01

Assembly method:

hifiasm v. 0.5

Genome coverage:

52.12x

Sequencing technology:

PacBio Sequel2

IDs: 10213041 [UID] 27167218 [GenBank] 28346528 [RefSeq]

See Genome Information for Carya illinoinensis

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018687715.1	≠	GCF_018687715.1	C.illinoinensisPawnee_v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	674,433,157
Total ungapped length	674,252,862
Gaps between scaffolds	18
Number of scaffolds	35
Scaffold N50	26,527,444
Scaffold L50	9
Number of contigs	39
Contig N50	26,032,966
Contig L50	10
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	39

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CM031809.1	=	NC_056752.1
Chromosome 2	CM031810.1	=	NC_056753.1
Chromosome 3	CM031811.1	=	NC_056754.1
Chromosome 4	CM031812.1	=	NC_056755.1
Chromosome 5	CM031813.1	=	NC_056756.1
Chromosome 6	CM031814.1	=	NC_056757.1
Chromosome 7	CM031815.1	=	NC_056758.1
Chromosome 8	CM031816.1	=	NC_056759.1
Chromosome 9	CM031817.1	=	NC_056760.1
Chromosome 10	CM031818.1	=	NC_056761.1
Chromosome 11	CM031819.1	=	NC_056762.1
Chromosome 12	CM031820.1	=	NC_056763.1
Chromosome 13	CM031821.1	=	NC_056764.1
Chromosome 14	CM031822.1	=	NC_056765.1
Chromosome 15	CM031823.1	=	NC_056766.1
Chromosome 16	CM031824.1	=	NC_056767.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	674,272,338	34	674,092,043	26,527,444	4	18
Chromosome 1	58,059,119	3	58,039,119	47,647,836	0	2
Chromosome 2	37,476,581	2	37,466,581	26,527,444	0	1
Chromosome 3	56,608,660	1	56,608,579	56,608,660	1	0
Chromosome 4	44,961,468	1	44,961,468	44,961,468	0	0
Chromosome 5	49,708,629	6	49,658,583	17,817,927	1	5
Chromosome 6	37,204,271	1	37,204,271	37,204,271	0	0
Chromosome 7	44,211,509	2	44,201,509	26,032,966	0	1
Chromosome 8	38,500,285	2	38,490,285	23,959,401	0	1
Chromosome 9	44,708,330	1	44,708,330	44,708,330	0	0
Chromosome 10	39,830,242	2	39,820,242	24,606,444	0	1
Chromosome 11	45,538,152	3	45,518,152	31,125,156	0	2
Chromosome 12	30,994,167	2	30,984,167	26,259,233	0	1
Chromosome 13	34,901,541	1	34,901,470	34,901,541	1	0
Chromosome 14	33,856,533	4	33,826,533	17,240,893	0	3
Chromosome 15	47,086,523	2	47,076,426	25,012,432	1	1
Chromosome 16	30,626,328	1	30,626,328	30,626,328	0	0

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C.illinoinensisPawnee_v1

See Genome Information for Carya illinoinensis

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear