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ASM1861785v1

Organism name:
Exiguobacterium qingdaonense (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: S82
BioSample:
SAMN15493208
BioProject:
PRJNA644789
Submitter:
Institute of Oceanology, Chinese Academy of Sciences
Date:
2021/06/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018617855.1 (latest)
RefSeq assembly accession:
GCF_018617855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACSKY01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina NovaSeq

IDs: 10173251 [UID] 27082098 [GenBank] 27178818 [RefSeq]

See Genome Information for Exiguobacterium qingdaonense

History (Show revision history)

Comment

Global statistics

Total sequence length2,738,116
Total ungapped length2,738,016
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50205,092
Scaffold L504
Number of contigs53
Contig N50205,092
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,738,116522,738,016205,09210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Exiguobacterium qingdaonenseExiguobacterium qingdaonense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000620845.1Exiguobacterium marinumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.8188.9286.79

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected