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ASM1861461v1

Organism name:
Streptomyces sp. ISL-100 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ISL-100
BioSample:
SAMN18298953
BioProject:
PRJNA291433
Submitter:
Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile
Date:
2021/06/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_018614615.1 (latest)
RefSeq assembly accession:
GCF_018614615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAGGOK01
Assembly method:
CLC Genomics Workbench v. 8.5.1
Expected final version:
no
Genome coverage:
50x
Sequencing technology:
Illumina GAIIx

IDs: 10170601 [UID] 27075318 [GenBank] 27176338 [RefSeq]

See Genome Information for Streptomyces sp. ISL-100

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/26/2021 18:17:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,090
CDSs (total)::8,015
Genes (coding)::7,597
CDSs (with protein)::7,597
Genes (RNA)::75
rRNAs::3, 1 (5S, 16S)
complete rRNAs::3, 1 (5S, 16S)
tRNAs::69
ncRNAs::2
Pseudo Genes (total)::418
CDSs (without protein)::418
Pseudo Genes (ambiguous residues)::1 of 418
Pseudo Genes (frameshifted)::216 of 418
Pseudo Genes (incomplete)::235 of 418
Pseudo Genes (internal stop)::32 of 418
Pseudo Genes (multiple problems)::61 of 418
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,699,384
Total ungapped length8,699,240
Gaps between scaffolds0
Number of scaffolds154
Scaffold N50111,385
Scaffold L5025
Number of contigs157
Contig N50109,615
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)154

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,699,3841548,699,240111,38530

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. ISL-100Streptomyces sp. ISL-100

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000429085.1Streptomyces flavidovirenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.7756.4669.47

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna