U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1839433v1

Organism name:
Shewanella dokdonensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:23626; KCTC:22898
Infraspecific name:
Strain: DSM 23626
BioSample:
SAMN19103065
BioProject:
PRJNA728757
Submitter:
Agricultural Bio-resources Research Institute
Date:
2021/05/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018394335.1 (latest)
RefSeq assembly accession:
GCF_018394335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
no
Genome coverage:
120.0x
Sequencing technology:
Illumina NovaSeq; Oxford Nanopore PromethION

IDs: 10067791 [UID] 26775228 [GenBank] 26901378 [RefSeq]

See Genome Information for Shewanella dokdonensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_018394335.1-RS_2024_04_26
Annotation Date::04/26/2024 04:29:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,101
CDSs (total)::3,984
Genes (coding)::3,298
CDSs (with protein)::3,298
Genes (RNA)::117
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::91
ncRNAs::4
Pseudo Genes (total)::686
CDSs (without protein)::686
Pseudo Genes (ambiguous residues)::0 of 686
Pseudo Genes (frameshifted)::638 of 686
Pseudo Genes (incomplete)::61 of 686
Pseudo Genes (internal stop)::10 of 686
Pseudo Genes (multiple problems)::23 of 686
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,127,406
Total ungapped length4,127,406
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018394345.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP074572.1=NZ_CP074572.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,127,406

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shewanella dokdonensisShewanella dokdonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023349145.1Shewanella fodinaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9877.1681.58

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected