U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1833265v1

Organism name:
Actinoplanes auranticolor (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: NBRC:12245
Infraspecific name:
Strain: NBRC 12245
BioSample:
SAMD00278761
BioProject:
PRJDB11100
Submitter:
Biological Resource Center, National Institute of Technology and Evaluation (NBRC)
Date:
2021/03/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018332655.1 (latest)
RefSeq assembly accession:
GCF_018332655.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BOQL01
Assembly method:
CLC Genomics Workbench v. 12.0
Genome coverage:
87x
Sequencing technology:
Illumina HiSeq 1000

IDs: 10030581 [UID] 26667838 [GenBank] 26728268 [RefSeq]

See Genome Information for Actinoplanes auranticolor

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated at DFAST https://dfast.nig.ac.jp/

Global statistics

Total sequence length9,878,734
Total ungapped length9,878,734
Number of contigs142
Contig N50141,324
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)142

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,878,7341429,878,734141,32400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinoplanes auranticolorActinoplanes auranticolor

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_039539905.1Actinoplanes auranticolortype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_039539905.1Actinoplanes auranticolortype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9399.80
Best-match type99.9999.9399.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna