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ASM1832398v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 8580
BioSample:
SAMD00294602
BioProject:
PRJDB11476
Submitter:
RIKEN, BDR
Date:
2021/04/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018323985.1 (latest)
RefSeq assembly accession:
GCF_018323985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.9-beta
Genome coverage:
230x
Sequencing technology:
Illumina MiSeq; ONT MinION

IDs: 10026091 [UID] 26659168 [GenBank] 26725828 [RefSeq]

See Genome Information for Enterobacter kobei

There are 619 assemblies for this organism

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History (Show revision history)

Comment

Annotated at DFAST https://dfast.nig.ac.jp/


The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/09/2023 12:04:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,532
CDSs (total)::4,418
Genes (coding)::4,350
CDSs (with protein)::4,350
Genes (RNA)::114
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::87
ncRNAs::5
Pseudo Genes (total)::68
CDSs (without protein)::68
Pseudo Genes (ambiguous residues)::0 of 68
Pseudo Genes (frameshifted)::33 of 68
Pseudo Genes (incomplete)::35 of 68
Pseudo Genes (internal stop)::13 of 68
Pseudo Genes (multiple problems)::11 of 68
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,737,575
Total ungapped length4,737,575
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018323995.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP024590.1=NZ_AP024590.1
Plasmid pENKO-1AP024591.1=NZ_AP024591.1

Assembly statistics

MoleculeTotal
Length
All4,737,575
Chromosome 4,622,719
Plasmid pENKO-1114,856

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001940295.1Enterobacter kobeisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001940295.1Enterobacter kobeisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9799.81
Best-match type99.9999.9799.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna