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Source database (GenBank or RefSeq) File type

ASM1794826v1

Organism name:: Rhodoferax sp. PAMC 29310 (b-proteobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: PAMC29310
BioSample:: SAMN18579863
BioProject:: PRJNA718970
Submitter:: Korea Polar Research Institute
Date:: 2021/04/14
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_017948265.1 (latest)
RefSeq assembly accession:: GCF_017948265.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: GS De Novo Assembler v. JUL-2020
Expected final version:: yes
Genome coverage:: 1.0x
Sequencing technology:: PacBio RSII; Illumina

IDs: 9830231 [UID] 26241888 [GenBank] 26351848 [RefSeq]

See Genome Information for Rhodoferax sp. PAMC 29310

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017948265.1	=	GCF_017948265.1	ASM1794826v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::08/07/2023 01:05:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,298
CDSs (total)::4,221
Genes (coding)::4,077
CDSs (with protein)::4,077
Genes (RNA)::77
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::56
ncRNAs::3
Pseudo Genes (total)::144
CDSs (without protein)::144
Pseudo Genes (ambiguous residues)::0 of 144
Pseudo Genes (frameshifted)::53 of 144
Pseudo Genes (incomplete)::80 of 144
Pseudo Genes (internal stop)::48 of 144
Pseudo Genes (multiple problems)::31 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,593,249
Total ungapped length	4,593,249
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	81.16	2.44	2.12

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ASM1794826v1

See Genome Information for Rhodoferax sp. PAMC 29310

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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