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ASM1690901v1

Organism name:
Gracilibacillus alcaliphilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:102988
Infraspecific name:
Strain: DSM 102988
BioSample:
SAMN17619973
BioProject:
PRJNA695641
Submitter:
DOE Joint Genome Institute
Date:
2021/02/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016909015.1 (latest)
RefSeq assembly accession:
GCF_016909015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFBFA01
Assembly method:
SPAdes v. 3.14.1
Expected final version:
no
Genome coverage:
99.0x
Sequencing technology:
Illumina

IDs: 9300001 [UID] 25038278 [GenBank] 25061058 [RefSeq]

See Genome Information for Gracilibacillus alcaliphilus

History (Show revision history)

Comment

Global statistics

Total sequence length5,175,195
Total ungapped length5,175,195
Number of contigs84
Contig N50110,457
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)84

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,175,195845,175,195110,45700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gracilibacillus alcaliphilusGracilibacillus alcaliphilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009659515.1Gracilibacillus thailandensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.982.593.09

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected