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ASM1689276v1

Organism name:
Microvirga arvi (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BT689
BioSample:
SAMN16384072
BioProject:
PRJNA667808
Submitter:
Seoul Women's University
Date:
2021/02/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016892765.1 (latest)
RefSeq assembly accession:
GCF_016892765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFEMD01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
47.0x
Sequencing technology:
Illumina iSeq

IDs: 9290771 [UID] 25011308 [GenBank] 25029428 [RefSeq]

See Genome Information for Microvirga arvi

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/10/2021 11:05:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,125
CDSs (total)::6,060
Genes (coding)::6,000
CDSs (with protein)::6,000
Genes (RNA)::65
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2 (16S)
tRNAs::56
ncRNAs::5
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::23 of 60
Pseudo Genes (incomplete)::41 of 60
Pseudo Genes (internal stop)::10 of 60
Pseudo Genes (multiple problems)::12 of 60
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,462,601
Total ungapped length6,462,601
Number of contigs230
Contig N5091,900
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)230

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,462,6012306,462,60191,90000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Microvirga arviMicrovirga arvi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016734765.1Microvirga solitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.9254.9856.89

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected