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EPA_FHM_2.0

Organism name:
Pimephales promelas (fathead minnow)
Infraspecific name:
Strain: EPAAWBERC
BioSample:
SAMN12875914
BioProject:
PRJNA565199
Submitter:
US EPA
Date:
2021/01/24
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016745375.1 (latest)
RefSeq assembly accession:
GCF_016745375.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
WIOS01
Assembly method:
CANU v. 1.8
Expected final version:
yes
Genome coverage:
70.0x
Sequencing technology:
PacBio RSII; Illumina HiSeq

IDs: 9180791 [UID] 24711848 [GenBank] 25033638 [RefSeq]

See Genome Information for Pimephales promelas

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,066,429,022
Total ungapped length925,390,548
Gaps between scaffolds0
Number of scaffolds911
Scaffold N5011,952,773
Scaffold L5023
Number of contigs6,368
Contig N50295,770
Contig L50903
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)911

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,066,412,313910925,373,83911,952,7735,4570
MoleculeTotal
Length
Mitochondrion MT16,709