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ASM1672730v1

Organism name:
Enterococcus casseliflavus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:25781
Infraspecific name:
Strain: FDAARGOS_1122
BioSample:
SAMN16357291
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/01/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016727305.1 (latest)
RefSeq assembly accession:
GCF_016727305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 7.1.0, HGAP v. 4
Genome coverage:
754.53x
Sequencing technology:
Pacbio; Illumina

IDs: 9170091 [UID] 24676808 [GenBank] 24709388 [RefSeq]

See Genome Information for Enterococcus casseliflavus

Pathogen Detection Resources

There are 214 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/06/2024 04:50:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,582
CDSs (total)::3,501
Genes (coding)::3,402
CDSs (with protein)::3,402
Genes (RNA)::81
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::99
CDSs (without protein)::99
Pseudo Genes (ambiguous residues)::0 of 99
Pseudo Genes (frameshifted)::54 of 99
Pseudo Genes (incomplete)::40 of 99
Pseudo Genes (internal stop)::17 of 99
Pseudo Genes (multiple problems)::11 of 99
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,651,004
Total ungapped length3,651,004
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016727315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP068126.1=NZ_CP068126.1
Plasmid unnamed1CP068124.1=NZ_CP068124.1
Plasmid unnamed2CP068125.1=NZ_CP068125.1
Plasmid unnamed3CP068127.1=NZ_CP068127.1

Assembly statistics

MoleculeTotal
Length
All3,651,004
Chromosome 3,514,679
Plasmid unnamed145,244
Plasmid unnamed232,649
Plasmid unnamed358,432

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus casseliflavusEnterococcus casseliflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016727345.1Enterococcus casseliflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016727345.1Enterococcus casseliflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7580.2882.60
Best-match type97.7580.2882.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna