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ASM1661761v1

Organism name:
Persephonella atlantica (aquificales)
Taxonomy check:
OK
Infraspecific name:
Strain: MO1340
BioSample:
SAMN13886004
BioProject:
PRJNA602219
Submitter:
Ifremer
Date:
2021/01/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016617615.1 (latest)
RefSeq assembly accession:
GCF_016617615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAACYA01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
840.0x
Sequencing technology:
Illumina NovaSeq

IDs: 9117451 [UID] 24532898 [GenBank] 24584988 [RefSeq]

See Genome Information for Persephonella atlantica

History (Show revision history)

Comment

Bacteria and source DNA available from https://www.univ-brest.fr/ubocc
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/23/2020 19:36:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,028
CDSs (total)::1,982
Genes (coding)::1,973
CDSs (with protein)::1,973
Genes (RNA)::46
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2 (16S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::3 of 9
Pseudo Genes (incomplete)::5 of 9
Pseudo Genes (internal stop)::1 of 9
CRISPR Arrays::7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,892,283
Total ungapped length1,892,283
Number of contigs5
Contig N50966,360
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,892,28351,892,283966,36000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Persephonella atlanticaPersephonella atlantica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900215515.1Persephonella hydrogeniphilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type78.7520.2019.13

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected