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ASM1535578v1

Organism name:
Arthrobacter gandavensis (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SR10_MTCC 25325
BioSample:
SAMN14478805
BioProject:
PRJNA615968
Submitter:
CSIR-Central Salt and Marine Chemicals Research Institute
Date:
2020/11/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_015355785.1 (latest)
RefSeq assembly accession:
GCF_015355785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADKYW01
Assembly method:
GS De Novo Assembler v. QUAST 4.0
Expected final version:
yes
Genome coverage:
12x
Sequencing technology:
Illumina HiSeq

IDs: 8484581 [UID] 23063748 [GenBank] 23087578 [RefSeq]

See Genome Information for Arthrobacter gandavensis

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/06/2020 18:37:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,133
CDSs (total)::3,070
Genes (coding)::3,035
CDSs (with protein)::3,035
Genes (RNA)::63
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 2, 2 (5S, 16S, 23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::35
CDSs (without protein)::35
Pseudo Genes (ambiguous residues)::0 of 35
Pseudo Genes (frameshifted)::11 of 35
Pseudo Genes (incomplete)::16 of 35
Pseudo Genes (internal stop)::8 of 35
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,372,897
Total ungapped length3,370,793
Gaps between scaffolds0
Number of scaffolds9
Scaffold N50829,386
Scaffold L502
Number of contigs20
Contig N50343,804
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)9

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,372,89793,370,793829,386110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Arthrobacter gandavensisArthrobacter gandavensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_039528575.1Arthrobacter gandavensissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009193255.1Arthrobacter koreensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.2584.0079.84
Best-match type89.4287.4483.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna