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ASM1513746v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: STN0717-53
BioSample:
SAMD00195972
BioProject:
PRJDB9036
Submitter:
Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:
2020/10/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015137465.1 (latest)
RefSeq assembly accession:
GCF_015137465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
flye v. 2.5; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v. 20140604
Genome coverage:
315x
Sequencing technology:
Sequel; NextSeq 500

IDs: 8367471 [UID] 22800508 [GenBank] 24614448 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

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History (Show revision history)

Comment

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/17/2023 04:58:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,316
CDSs (total)::5,203
Genes (coding)::5,103
CDSs (with protein)::5,103
Genes (RNA)::113
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::5
Pseudo Genes (total)::100
CDSs (without protein)::100
Pseudo Genes (ambiguous residues)::0 of 100
Pseudo Genes (frameshifted)::32 of 100
Pseudo Genes (incomplete)::71 of 100
Pseudo Genes (internal stop)::15 of 100
Pseudo Genes (multiple problems)::15 of 100
Pseudo Genes (short protein)::1 of 100
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,400,778
Total ungapped length5,400,778
Total number of chromosomes and plasmids10

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015137505.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP022498.1=NZ_AP022498.1
Plasmid pSTN0717-53-1AP022499.1=NZ_AP022499.1
Plasmid pSTN0717-53-2AP022500.1=NZ_AP022500.1
Plasmid pSTN0717-53-3AP022501.1=NZ_AP022501.1
Plasmid pSTN0717-53-4AP022502.1=NZ_AP022502.1
Plasmid pSTN0717-53-5AP022503.1=NZ_AP022503.1
Plasmid pSTN0717-53-6AP022504.1=NZ_AP022504.1
Plasmid pSTN0717-53-7AP022505.1=NZ_AP022505.1
Plasmid pSTN0717-53-8AP022506.1=NZ_AP022506.1
Plasmid pSTN0717-53-9AP022507.1=NZ_AP022507.1

Assembly statistics

MoleculeTotal
Length
All5,400,778
Chromosome 4,850,698
Plasmid pSTN0717-53-1282,901
Plasmid pSTN0717-53-2145,421
Plasmid pSTN0717-53-397,602
Plasmid pSTN0717-53-44,938
Plasmid pSTN0717-53-54,918
Plasmid pSTN0717-53-64,426
Plasmid pSTN0717-53-74,161
Plasmid pSTN0717-53-83,360
Plasmid pSTN0717-53-92,353

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0781.5689.40
Best-match type99.0781.5689.40

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna