U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1513585v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: STW0522-60
BioSample:
SAMD00195900
BioProject:
PRJDB9036
Submitter:
Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:
2020/10/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015135855.1 (latest)
RefSeq assembly accession:
GCF_015135855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
flye v. 2.5; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v. 20140604
Genome coverage:
409x
Sequencing technology:
Sequel; NextSeq 500

IDs: 8367391 [UID] 22798868 [GenBank] 24613948 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/17/2023 04:22:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,372
CDSs (total)::5,255
Genes (coding)::5,104
CDSs (with protein)::5,104
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::83
ncRNAs::9
Pseudo Genes (total)::151
CDSs (without protein)::151
Pseudo Genes (ambiguous residues)::0 of 151
Pseudo Genes (frameshifted)::36 of 151
Pseudo Genes (incomplete)::112 of 151
Pseudo Genes (internal stop)::23 of 151
Pseudo Genes (multiple problems)::19 of 151
Pseudo Genes (short protein)::1 of 151
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,412,308
Total ungapped length5,412,308
Total number of chromosomes and plasmids6

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015135905.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP022446.1=NZ_AP022446.1
Plasmid pSTW0522-60-1AP022447.1=NZ_AP022447.1
Plasmid pSTW0522-60-2AP022448.1=NZ_AP022448.1
Plasmid pSTW0522-60-3AP022449.1=NZ_AP022449.1
Plasmid pSTW0522-60-4AP022450.1=NZ_AP022450.1
Plasmid pSTW0522-60-5AP022451.1=NZ_AP022451.1

Assembly statistics

MoleculeTotal
Length
All5,412,308
Chromosome 5,000,117
Plasmid pSTW0522-60-1278,483
Plasmid pSTW0522-60-287,293
Plasmid pSTW0522-60-338,551
Plasmid pSTW0522-60-45,650
Plasmid pSTW0522-60-52,214

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0680.2588.15
Best-match type99.0680.2588.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna