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ASM1513559v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: STW0522-51
BioSample:
SAMD00195891
BioProject:
PRJDB9036
Submitter:
Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:
2020/10/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015135595.1 (latest)
RefSeq assembly accession:
GCF_015135595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
flye v. 2.5; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v. 20140604
Genome coverage:
315x
Sequencing technology:
Sequel; NextSeq 500

IDs: 8367371 [UID] 22798468 [GenBank] 24613928 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

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History (Show revision history)

Comment

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/17/2023 04:32:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,033
CDSs (total)::4,930
Genes (coding)::4,778
CDSs (with protein)::4,778
Genes (RNA)::103
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::72
ncRNAs::6
Pseudo Genes (total)::152
CDSs (without protein)::152
Pseudo Genes (ambiguous residues)::0 of 152
Pseudo Genes (frameshifted)::52 of 152
Pseudo Genes (incomplete)::98 of 152
Pseudo Genes (internal stop)::25 of 152
Pseudo Genes (multiple problems)::20 of 152
Pseudo Genes (short protein)::1 of 152
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,163,318
Total ungapped length5,163,318
Total number of chromosomes and plasmids7

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015135605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP022431.1=NZ_AP022431.1
Plasmid pSTW0522-51-1AP022432.1=NZ_AP022432.1
Plasmid pSTW0522-51-2AP022433.1=NZ_AP022433.1
Plasmid pSTW0522-51-3AP022434.1=NZ_AP022434.1
Plasmid pSTW0522-51-4AP022435.1=NZ_AP022435.1
Plasmid pSTW0522-51-5AP022436.1=NZ_AP022436.1
Plasmid pSTW0522-51-6AP022437.1=NZ_AP022437.1

Assembly statistics

MoleculeTotal
Length
All5,163,318
Chromosome 4,702,407
Plasmid pSTW0522-51-1159,829
Plasmid pSTW0522-51-2100,655
Plasmid pSTW0522-51-386,076
Plasmid pSTW0522-51-456,044
Plasmid pSTW0522-51-548,857
Plasmid pSTW0522-51-69,450

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1484.7488.80
Best-match type99.1484.7488.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna