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Source database (GenBank or RefSeq) File type

ASM1510439v2

Organism name:

Macrobrachium nipponense (oriental river prawn)

Isolate:

FS-2020

Sex:

male

BioSample:

SAMN15523073

BioProject:

PRJNA646023

Submitter:

BGI-SZ

Date:

2020/10/29

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_015104395.2 (latest)

RefSeq assembly accession:

GCF_015104395.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

Assembly method:

Shasta v. 1.0

Expected final version:

yes

Genome coverage:

80.0x

Sequencing technology:

PacBio Sequel

IDs: 21555411 [UID] 54267348 [GenBank] 55348408 [RefSeq]

See Genome Information for Macrobrachium nipponense

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_015104395.2	≠	GCF_015104395.2	ASM1510439v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_015104395.1	n/a	n/a	ASM1510439v1	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	4,253,878,664
Total ungapped length	4,236,077,664
Gaps between scaffolds	0
Number of scaffolds	50
Scaffold N50	89,928,525
Scaffold L50	18
Number of contigs	35,652
Contig N50	255,022
Contig L50	3,737
Total number of chromosomes and plasmids	50
Number of component sequences (WGS or clone)	50

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP062017.1	=	NC_087200.1
Chromosome 2	CP062027.1	=	NC_087201.1
Chromosome 3	CP062023.1	=	NC_087202.1
Chromosome 4	CP062050.1	=	NC_061100.1
Chromosome 5	CP062057.1	=	NC_061107.1
Chromosome 6	CP062044.1	=	NC_061108.1
Chromosome 7	CP062036.1	=	NC_061109.1
Chromosome 8	CP062015.1	=	NC_087203.1
Chromosome 9	CP062053.1	=	NC_061110.1
Chromosome 10	CP062032.1	=	NC_087204.1
Chromosome 11	CP062045.1	=	NC_061087.1
Chromosome 12	CP062025.1	=	NC_087205.1
Chromosome 13	CP062031.1	=	NC_087206.1
Chromosome 14	CP062014.1	=	NC_087207.1
Chromosome 15	CP062026.1	=	NC_087208.1
Chromosome 16	CP062020.1	=	NC_087209.1
Chromosome 17	CP062018.1	=	NC_087210.1
Chromosome 18	CP062022.1	=	NC_087211.1
Chromosome 19	CP062040.1	=	NC_061088.1
Chromosome 20	CP062037.1	=	NC_061089.1
Chromosome 21	CP062019.1	=	NC_087212.1
Chromosome 22	CP062013.1	=	NC_087213.1
Chromosome 23	CP062038.1	=	NC_061090.1
Chromosome 24	CP062048.1	=	NC_061091.1
Chromosome 25	CP062021.1	=	NC_087214.1
Chromosome 26	CP062012.1	=	NC_087215.1
Chromosome 27	CP062030.1	=	NC_087216.1
Chromosome 28	CP062029.1	=	NC_087217.1
Chromosome 29	CP062042.1	=	NC_061092.1
Chromosome 30	CP062009.1	=	NC_087218.1
Chromosome 31	CP062049.1	=	NC_061093.1
Chromosome 32	CP062034.1	=	NC_061094.1
Chromosome 33	CP062028.1	=	NC_087219.1
Chromosome 34	CP062047.1	=	NC_061095.1
Chromosome 35	CP062046.1	=	NC_061096.1
Chromosome 36	CP062024.1	=	NC_087220.1
Chromosome 37	CP062039.1	=	NC_061097.1
Chromosome 38	CP062056.1	=	NC_061098.1
Chromosome 39	CP062052.1	=	NC_061099.1
Chromosome 40	CP062055.1	=	NC_061101.1
Chromosome 41	CP062035.1	=	NC_061102.1
Chromosome 42	CP062051.1	=	NC_061103.1
Chromosome 43	CP062054.1	=	NC_061104.1
Chromosome 44	CP062010.1	=	NC_087221.1
Chromosome 45	CP062043.1	=	NC_061105.1
Chromosome 46	CP062041.1	=	NC_061106.1
Chromosome 47	CP062011.1	=	NC_087222.1
Chromosome 48	CP062016.1	=	NC_087223.1
Chromosome 49	CP062033.1	=	NC_087224.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	4,253,862,858	49	4,236,061,858	89,928,525	35,602
Chromosome 1	219,860,744	1	218,964,744	219,860,744	1,792
Chromosome 2	172,467,068	1	171,738,568	172,467,068	1,457
Chromosome 3	149,201,215	1	148,650,715	149,201,215	1,101
Chromosome 4	147,348,046	1	146,833,546	147,348,046	1,029
Chromosome 5	145,761,036	1	145,101,536	145,761,036	1,319
Chromosome 6	141,118,707	1	140,612,707	141,118,707	1,012
Chromosome 7	117,513,786	1	117,122,286	117,513,786	783
Chromosome 8	117,544,214	1	117,104,214	117,544,214	880
Chromosome 9	110,933,481	1	110,470,981	110,933,481	925
Chromosome 10	110,017,949	1	109,503,949	110,017,949	1,028
Chromosome 11	108,604,742	1	108,288,742	108,604,742	632
Chromosome 12	106,565,005	1	106,170,005	106,565,005	790
Chromosome 13	103,615,384	1	103,196,384	103,615,384	838
Chromosome 14	99,588,160	1	99,030,660	99,588,160	1,115
Chromosome 15	93,504,222	1	93,089,222	93,504,222	830
Chromosome 16	92,354,735	1	91,927,235	92,354,735	855
Chromosome 17	89,928,525	1	89,624,525	89,928,525	608
Chromosome 18	90,060,326	1	89,596,826	90,060,326	927
Chromosome 19	86,821,439	1	86,543,439	86,821,439	556
Chromosome 20	86,609,022	1	86,347,522	86,609,022	523
Chromosome 21	84,091,324	1	83,871,824	84,091,324	439
Chromosome 22	83,304,076	1	83,088,576	83,304,076	431
Chromosome 23	83,001,933	1	82,618,933	83,001,933	766
Chromosome 24	81,389,656	1	81,110,156	81,389,656	559
Chromosome 25	78,920,981	1	78,338,481	78,920,981	1,165
Chromosome 26	78,463,671	1	78,119,171	78,463,671	689
Chromosome 27	77,890,169	1	77,520,669	77,890,169	739
Chromosome 28	75,602,129	1	75,412,129	75,602,129	380
Chromosome 29	75,016,964	1	74,753,464	75,016,964	527
Chromosome 30	73,438,552	1	73,155,552	73,438,552	566
Chromosome 31	73,203,386	1	72,815,886	73,203,386	775
Chromosome 32	73,171,013	1	72,795,013	73,171,013	752
Chromosome 33	71,649,916	1	71,356,916	71,649,916	586
Chromosome 34	71,390,351	1	71,012,851	71,390,351	755
Chromosome 35	67,553,775	1	67,369,775	67,553,775	368
Chromosome 36	66,999,283	1	66,627,783	66,999,283	743
Chromosome 37	66,757,347	1	66,449,847	66,757,347	615
Chromosome 38	62,717,774	1	62,312,274	62,717,774	811
Chromosome 39	60,588,909	1	60,294,909	60,588,909	588
Chromosome 40	58,878,174	1	58,601,674	58,878,174	553
Chromosome 41	58,294,594	1	58,109,094	58,294,594	371
Chromosome 42	54,564,452	1	54,262,952	54,564,452	603
Chromosome 43	53,539,879	1	53,340,879	53,539,879	398
Chromosome 44	52,992,041	1	52,819,541	52,992,041	345
Chromosome 45	52,246,884	1	52,011,384	52,246,884	471
Chromosome 46	48,001,745	1	47,781,245	48,001,745	441
Chromosome 47	36,926,747	1	36,610,247	36,926,747	633
Chromosome 48	24,093,560	1	23,924,560	24,093,560	338
Chromosome 49	19,755,767	1	19,658,267	19,755,767	195

Assembly

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ASM1510439v2

See Genome Information for Macrobrachium nipponense

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear