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ASM1433411v1

Organism name:
Sphingosinithalassobacter sp. CS137 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CS137
BioSample:
SAMN15817234
BioProject:
PRJNA657156
Submitter:
Institute of Oceanology, Chinese academy of sciences
Date:
2020/08/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_014334115.1 (latest)
RefSeq assembly accession:
GCF_014334115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMART LINK v. 5.0.1
Expected final version:
yes
Genome coverage:
226.0x
Sequencing technology:
PacBio RSII

IDs: 7964851 [UID] 21837798 [GenBank] 22064858 [RefSeq]

See Genome Information for Sphingosinithalassobacter sp. CS137

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/18/2023 02:35:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,163
CDSs (total)::3,112
Genes (coding)::3,098
CDSs (with protein)::3,098
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::4 of 14
Pseudo Genes (incomplete)::10 of 14
Pseudo Genes (internal stop)::1 of 14
Pseudo Genes (multiple problems)::1 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,194,162
Total ungapped length3,194,162
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014334125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP060494.1=NZ_CP060494.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,194,162

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingosinithalassobacter sp. CS137Sphingosinithalassobacter sp. CS137

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002351485.1Sphingomonas spermidinifacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.7413.1711.57

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna