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ASM1404195v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IB2020
BioSample:
SAMN15594913
BioProject:
PRJNA647675
Submitter:
Charles University in Prague
Date:
2020/08/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_014041955.1 (latest)
RefSeq assembly accession:
GCF_014041955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Microbial Assembly v. SMRT Link v.9
Expected final version:
yes
Genome coverage:
384.0x
Sequencing technology:
PacBio Sequel

IDs: 7807351 [UID] 21379538 [GenBank] 21536328 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/08/2024 02:36:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,328
CDSs (total)::5,207
Genes (coding)::5,042
CDSs (with protein)::5,042
Genes (RNA)::121
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::90
ncRNAs::6
Pseudo Genes (total)::165
CDSs (without protein)::165
Pseudo Genes (ambiguous residues)::0 of 165
Pseudo Genes (frameshifted)::45 of 165
Pseudo Genes (incomplete)::121 of 165
Pseudo Genes (internal stop)::21 of 165
Pseudo Genes (multiple problems)::18 of 165
Pseudo Genes (short protein)::1 of 165
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,419,765
Total ungapped length5,419,765
Total number of chromosomes and plasmids7

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014041965.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP059481.1=NZ_CP059481.1
Plasmid pIB2020_ColE_MCRCP059482.1=NZ_CP059482.1
Plasmid pIB2020_IncACP059480.1=NZ_CP059480.1
Plasmid pIB2020_IncFIBCP059483.1=NZ_CP059483.1
Plasmid pIB2020_LCP059484.1=NZ_CP059484.1
Plasmid pIB2020_NCP059485.1=NZ_CP059485.1
Plasmid pIB2020_SCP059486.1=NZ_CP059486.1

Assembly statistics

MoleculeTotal
Length
All5,419,765
Chromosome 4,997,888
Plasmid pIB2020_ColE_MCR12,808
Plasmid pIB2020_IncA165,722
Plasmid pIB2020_IncFIB85,067
Plasmid pIB2020_L150,133
Plasmid pIB2020_N6,127
Plasmid pIB2020_S2,020

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0580.1488.15
Best-match type99.0580.1488.15

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna