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ZZ_aureus

Organism name:
Oreochromis aureus (blue tilapia)
Infraspecific name:
Breed: Guangdong
Infraspecific name:
Strain: Israel
Sex:
male
BioSample:
SAMN14256941
BioProject:
PRJNA609616
Submitter:
University of Vienna
Date:
2020/06/19
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_013358895.1 (latest)
RefSeq assembly accession:
GCF_013358895.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAAMTF01
Assembly method:
Flye v. 2.3.1; 3d-DNA v. 180114
Expected final version:
yes
Genome coverage:
85.0x
Sequencing technology:
Oxford Nanopore PromethION

IDs: 7290121 [UID] 20119458 [GenBank] 24972438 [RefSeq]

See Genome Information for Oreochromis aureus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,005,575,223
Total ungapped length1,005,289,339
Gaps between scaffolds0
Number of scaffolds304
Scaffold N5040,723,988
Scaffold L5010
Number of contigs1,026
Contig N504,182,292
Contig L5065
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)304

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_013358905.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM023631.1=NC_052942.10
Linkage Group LG2CM023632.1=NC_052943.10
Linkage Group LG3CM023633.1=NC_052944.10
Linkage Group LG4CM023634.1=NC_052945.10
Linkage Group LG5CM023635.1=NC_052946.10
Linkage Group LG6CM023636.1=NC_052947.10
Linkage Group LG7CM023637.1=NC_052948.10
Linkage Group LG8CM023638.1=NC_052949.10
Linkage Group LG9CM023639.1=NC_052950.10
Linkage Group LG10CM023640.1=NC_052951.10
Linkage Group LG11CM023641.1=NC_052952.10
Linkage Group LG12CM023642.1=NC_052953.10
Linkage Group LG13CM023643.1=NC_052954.10
Linkage Group LG14CM023644.1=NC_052955.10
Linkage Group LG15CM023645.1=NC_052956.10
Linkage Group LG16CM023646.1=NC_052957.10
Linkage Group LG17CM023647.1=NC_052958.10
Linkage Group LG18CM023648.1=NC_052959.10
Linkage Group LG19CM023649.1=NC_052960.10
Linkage Group LG20CM023650.1=NC_052961.10
Linkage Group LG22CM023651.1=NC_052962.10
Linkage Group LG23CM023652.1=NC_052963.10
unplacedn/an/an/a281

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,005,558,5953031,005,272,71140,723,9887220
Linkage Group LG142,306,174142,296,02942,306,174230
Linkage Group LG237,259,197137,250,06637,259,197210
Linkage Group LG3134,388,2341134,346,438134,388,2341090
Linkage Group LG437,304,823137,301,12637,304,82380
Linkage Group LG542,508,297142,498,96242,508,297200
Linkage Group LG643,189,839143,179,60543,189,839240
Linkage Group LG766,620,846166,600,90966,620,846470
Linkage Group LG831,565,216131,560,12231,565,216170
Linkage Group LG940,723,988140,716,17040,723,988240
Linkage Group LG1035,972,536135,960,97935,972,536280
Linkage Group LG1139,343,237139,328,27939,343,237480
Linkage Group LG1239,851,090139,843,42639,851,090190
Linkage Group LG1335,907,459135,902,58335,907,459170
Linkage Group LG1442,151,558142,133,29242,151,558460
Linkage Group LG1541,599,371141,588,71941,599,371310
Linkage Group LG1636,267,751136,245,51636,267,751490
Linkage Group LG1739,943,299139,939,69139,943,29990
Linkage Group LG1837,552,967137,535,45237,552,967450
Linkage Group LG1932,007,781132,003,22132,007,781150
Linkage Group LG2038,218,816138,198,59738,218,816490
Linkage Group LG2241,865,039141,854,73541,865,039220
Linkage Group LG2346,429,046146,422,08546,429,046180
unplaced22,582,03128122,566,709162,265330
MoleculeTotal
Length
Mitochondrion MT16,628