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ASM1334311v1

Organism name:
Streptococcus sanguinis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: FDA:FDAARGOS_770
Infraspecific name:
Strain: FDAARGOS_770
BioSample:
SAMN11056485
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2020/06/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_013343115.1 (latest)
RefSeq assembly accession:
GCF_013343115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.7
Genome coverage:
1678.5x
Sequencing technology:
Pacbio; Illumina

IDs: 7280761 [UID] 20075368 [GenBank] 20078788 [RefSeq]

See Genome Information for Streptococcus sanguinis

There are 147 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/24/2023 03:46:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,316
CDSs (total)::2,241
Genes (coding)::2,195
CDSs (with protein)::2,195
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::46
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::31 of 46
Pseudo Genes (incomplete)::20 of 46
Pseudo Genes (internal stop)::6 of 46
Pseudo Genes (multiple problems)::11 of 46
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,358,846
Total ungapped length2,358,846
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_013343125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP054570.1=NZ_CP054570.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,358,846

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sanguinisStreptococcus sanguinis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475505.1Streptococcus sanguinistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475505.1Streptococcus sanguinistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.1486.4688.79
Best-match type95.1486.4688.79

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna