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ASM1311482v1

Organism name:
Bradyrhizobium australiense (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WSM 1791
BioSample:
SAMN14448309
BioProject:
PRJNA615193
Submitter:
Empresa Brasileira de Pesquisa Agropecuaria
Date:
2020/05/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013114825.1 (latest)
RefSeq assembly accession:
GCF_013114825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAVLX01
Assembly method:
A5-miseq pipeline (de novo) v. 20140604
Expected final version:
yes
Genome coverage:
82.0x
Sequencing technology:
Illumina MiSeq

IDs: 7144031 [UID] 19638948 [GenBank] 19686508 [RefSeq]

See Genome Information for Bradyrhizobium australiense

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/31/2020 23:34:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,079
CDSs (total)::7,025
Genes (coding)::6,654
CDSs (with protein)::6,654
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::371
CDSs (without protein)::371
Pseudo Genes (ambiguous residues)::0 of 371
Pseudo Genes (frameshifted)::263 of 371
Pseudo Genes (incomplete)::163 of 371
Pseudo Genes (internal stop)::71 of 371
Pseudo Genes (multiple problems)::109 of 371
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,436,256
Total ungapped length7,436,256
Number of contigs46
Contig N50720,641
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,436,256467,436,256720,64100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium australienseBradyrhizobium australiense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000472965.1Bradyrhizobium murdochitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.7572.4867.78

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected