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Source database (GenBank or RefSeq) File type

ASM1251649v1

Organism name:: Mycoplasma sp. 1654_15 (mycoplasmas)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: 1654_15
BioSample:: SAMN14569832
BioProject:: PRJNA624169
Submitter:: Institute of Microbiology
Date:: 2020/04/19
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_012516495.1 (latest)
RefSeq assembly accession:: GCF_012516495.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.4.8
Expected final version:: yes
Genome coverage:: 4300.0x
Sequencing technology:: Illumina MiSeq; Oxford Nanopore MinIon

IDs: 6841541 [UID] 18913608 [GenBank] 19264428 [RefSeq]

See Genome Information for Mycoplasma sp. 1654_15

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_012516495.1	=	GCF_012516495.1	ASM1251649v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Dr. Joachim Spergser, Institute of Microbiology, Vetmeduni Vienna
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/26/2024 17:00:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::771
CDSs (total)::735
Genes (coding)::721
CDSs (with protein)::721
Genes (RNA)::36
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::30
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::12 of 14
Pseudo Genes (incomplete)::2 of 14
Pseudo Genes (internal stop)::5 of 14
Pseudo Genes (multiple problems)::5 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	923,061
Total ungapped length	923,061
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.05	65.78	72.38

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ASM1251649v1

See Genome Information for Mycoplasma sp. 1654_15

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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