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Source database (GenBank or RefSeq) File type

ASM1243209v1

Organism name:

Onychostoma macrolepis (bony fishes)

Isolate:

SWU-2019

Sex:

female

BioSample:

SAMN14163390

BioProject:

PRJNA608076

Submitter:

SOUTHWEST UNIVERSITY

Date:

2020/04/17

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_012432095.1 (latest)

RefSeq assembly accession:

GCF_012432095.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAAMOB01

Assembly method:

WTDBG v. 1.2.8

Expected final version:

yes

Genome coverage:

93.85x

Sequencing technology:

Oxford Nanopore PromethION; Illumina HiSeq; Hi-C; Bionano optical mapping

IDs: 6819731 [UID] 18879378 [GenBank] 45853298 [RefSeq]

See Genome Information for Onychostoma macrolepis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_012432095.1	≠	GCF_012432095.1	ASM1243209v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	886,586,436
Total ungapped length	883,243,104
Gaps between scaffolds	0
Number of scaffolds	353
Scaffold N50	34,067,727
Scaffold L50	11
Number of contigs	970
Contig N50	10,809,623
Contig L50	24
Total number of chromosomes and plasmids	26
Number of component sequences (WGS or clone)	353

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 01	CM022810.1	=	NC_081155.1	0
Chromosome 02	CM022811.1	=	NC_081156.1	0
Chromosome 03	CM022812.1	=	NC_081157.1	0
Chromosome 04	CM022813.1	=	NC_081158.1	0
Chromosome 05	CM022814.1	=	NC_081159.1	0
Chromosome 06	CM022815.1	=	NC_081160.1	0
Chromosome 07	CM022816.1	=	NC_081161.1	0
Chromosome 08	CM022817.1	=	NC_081162.1	0
Chromosome 09	CM022818.1	=	NC_081163.1	0
Chromosome 10	CM022794.1	=	NC_081164.1	0
Chromosome 11	CM022795.1	=	NC_081165.1	0
Chromosome 12	CM022796.1	=	NC_081166.1	0
Chromosome 13	CM022797.1	=	NC_081167.1	0
Chromosome 14	CM022798.1	=	NC_081168.1	0
Chromosome 15	CM022799.1	=	NC_081169.1	0
Chromosome 16	CM022800.1	=	NC_081170.1	0
Chromosome 17	CM022801.1	=	NC_081171.1	0
Chromosome 18	CM022802.1	=	NC_081172.1	0
Chromosome 19	CM022803.1	=	NC_081173.1	0
Chromosome 20	CM022804.1	=	NC_081174.1	0
Chromosome 21	CM022805.1	=	NC_081175.1	0
Chromosome 22	CM022806.1	=	NC_081176.1	0
Chromosome 23	CM022807.1	=	NC_081177.1	0
Chromosome 24	CM022808.1	=	NC_081178.1	0
Chromosome 25	CM022809.1	=	NC_081179.1	0
unplaced	n/a	n/a	n/a	327

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	886,569,841	352	883,226,509	34,067,727	617
Chromosome 01	47,777,555	1	47,479,080	47,777,555	51
Chromosome 02	36,543,938	1	36,529,837	36,543,938	9
Chromosome 03	56,488,920	1	56,231,613	56,488,920	107
Chromosome 04	36,172,067	1	35,694,625	36,172,067	63
Chromosome 05	45,979,060	1	45,931,387	45,979,060	10
Chromosome 06	33,965,053	1	33,876,313	33,965,053	8
Chromosome 07	49,204,074	1	49,069,062	49,204,074	37
Chromosome 08	29,488,773	1	29,406,501	29,488,773	10
Chromosome 09	37,340,291	1	37,262,890	37,340,291	16
Chromosome 10	26,925,735	1	26,838,908	26,925,735	9
Chromosome 11	29,382,869	1	29,276,547	29,382,869	23
Chromosome 12	31,408,066	1	31,330,176	31,408,066	9
Chromosome 13	32,805,379	1	32,743,082	32,805,379	3
Chromosome 14	32,525,421	1	32,403,826	32,525,421	8
Chromosome 15	31,805,308	1	31,801,484	31,805,308	19
Chromosome 16	36,698,381	1	36,482,134	36,698,381	18
Chromosome 17	32,212,669	1	32,092,966	32,212,669	18
Chromosome 18	34,194,882	1	34,104,530	34,194,882	8
Chromosome 19	34,067,727	1	34,015,691	34,067,727	24
Chromosome 20	32,790,944	1	32,615,395	32,790,944	18
Chromosome 21	31,708,312	1	31,560,872	31,708,312	19
Chromosome 22	38,412,075	1	38,121,845	38,412,075	89
Chromosome 23	30,435,843	1	30,374,815	30,435,843	8
Chromosome 24	27,703,619	1	27,580,387	27,703,619	13
Chromosome 25	25,271,208	1	25,140,871	25,271,208	20
unplaced	5,261,672	327	5,261,672	21,460	0

Assembly

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ASM1243209v1

See Genome Information for Onychostoma macrolepis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear