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ASM1203433v1

Organism name:
Alkalicoccus luteus (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: H11
BioSample:
SAMN14435792
BioProject:
PRJNA304244
Submitter:
Eotvos Lorand University
Date:
2020/04/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012034335.1 (latest)
RefSeq assembly accession:
GCF_012034335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAATHJ01
Assembly method:
SPAdes v. 3.9.1.
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
Illumina HiSeq

IDs: 6600061 [UID] 18403468 [GenBank] 18658328 [RefSeq]

See Genome Information for Alkalicoccus luteus

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/25/2020 15:26:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,611
CDSs (total)::3,517
Genes (coding)::3,479
CDSs (with protein)::3,479
Genes (RNA)::94
rRNAs::6, 4, 10 (5S, 16S, 23S)
complete rRNAs::5, 1 (5S, 16S)
partial rRNAs::1, 3, 10 (5S, 16S, 23S)
tRNAs::69
ncRNAs::5
Pseudo Genes (total)::38
CDSs (without protein)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::14 of 38
Pseudo Genes (incomplete)::16 of 38
Pseudo Genes (internal stop)::10 of 38
Pseudo Genes (multiple problems)::2 of 38
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,551,142
Total ungapped length3,551,142
Number of contigs145
Contig N5099,409
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)145

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,551,1421453,551,14299,40900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alkalicoccus luteusAlkalicoccus luteus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002993335.1Alkalicoccus urumqiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.671.841.99

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena