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ASM1180075v1

Organism name:
Listeria valentina (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CLIP 2019/00642
BioSample:
SAMN14446203
BioProject:
PRJNA615063
Submitter:
Institut Pasteur
Date:
2020/03/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_011800755.1 (latest)
RefSeq assembly accession:
GCF_011800755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAATJW01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
95.0x
Sequencing technology:
Illumina NextSeq

IDs: 6469881 [UID] 18166688 [GenBank] 18456688 [RefSeq]

See Genome Information for Listeria valentina

History (Show revision history)

Comment

Bacteria and source DNA available from Institut Pasteur

Global statistics

Total sequence length2,763,400
Total ungapped length2,763,400
Number of contigs165
Contig N5038,823
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)165

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,763,4001652,763,40038,82300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Listeria valentinaListeria valentina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000525795.1Listeria aquaticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.4079.9584.93

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected