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ASM1160480v1

Organism name:
Deinococcus radiodurans (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BNK-50
BioSample:
SAMN14371193
BioProject:
PRJNA612369
Submitter:
Korea Atomic Energy Research Institute
Date:
2020/03/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_011604805.1 (latest)
RefSeq assembly accession:
GCF_011604805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
410.0x
Sequencing technology:
PacBio RS

IDs: 6384191 [UID] 17951628 [GenBank] 17956088 [RefSeq]

See Genome Information for Deinococcus radiodurans

Pathogen Detection Resources

There are 17 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Dr. Sangyong Lim in Korea Atomic Energy Research Institute (KAERI)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_011604805.1-RS_2024_04_19
Annotation Date::04/19/2024 13:17:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,250
CDSs (total)::3,188
Genes (coding)::3,107
CDSs (with protein)::3,107
Genes (RNA)::62
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::81
CDSs (without protein)::81
Pseudo Genes (ambiguous residues)::0 of 81
Pseudo Genes (frameshifted)::55 of 81
Pseudo Genes (incomplete)::25 of 81
Pseudo Genes (internal stop)::2 of 81
Pseudo Genes (multiple problems)::1 of 81
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,284,329
Total ungapped length3,284,329
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_011604815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP050116.1=NZ_CP050116.1
Chromosome 2CP050117.1=NZ_CP050117.1
Plasmid pCP1CP050119.1=NZ_CP050119.1
Plasmid pMP1CP050118.1=NZ_CP050118.1

Assembly statistics

MoleculeTotal
Length
All3,284,329
Chromosome 12,648,775
Chromosome 2411,628
Plasmid pCP146,570
Plasmid pMP1177,356

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deinococcus radioduransDeinococcus radiodurans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001638825.1Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001638825.1Deinococcus radioduranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8898.08
Best-match type99.9999.8898.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna