Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM993621v1

Organism name:: Athalassotoga saccharophila (bacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: JCM:19762
Infraspecific name:: Strain: NAS-01
BioSample:: SAMD00164671
BioProject:: PRJDB8084
Submitter:: RIKEN-BRC, JCM
Date:: 2019/12/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_009936215.1 (latest)
RefSeq assembly accession:: GCF_009936215.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.4.7
Genome coverage:: 500x
Sequencing technology:: Illumina MiSeq; Oxford Nanopore

IDs: 5499551 [UID] 15959058 [GenBank] 16186788 [RefSeq]

See Genome Information for Athalassotoga saccharophila

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009936215.1	=	GCF_009936215.1	ASM993621v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 01:26:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,024
CDSs (total)::1,967
Genes (coding)::1,962
CDSs (with protein)::1,962
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::0 of 5
Pseudo Genes (incomplete)::4 of 5
Pseudo Genes (internal stop)::2 of 5
Pseudo Genes (multiple problems)::1 of 5
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,044,999
Total ungapped length	2,044,999
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP019551.1	=	NZ_AP019551.1
Plasmid pATS1	AP019552.1	=	NZ_AP019552.1
Plasmid pATS2	AP019553.1	=	NZ_AP019553.1

Molecule	Total Length
All	2,044,999
Chromosome	1,957,762
Plasmid pATS1	43,703
Plasmid pATS2	43,534

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.68	0.42	0.39

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM993621v1

See Genome Information for Athalassotoga saccharophila

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result