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ASM976227v1

Organism name:
Haloplanus rallus (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MBLA0036
BioSample:
SAMN10524788
BioProject:
PRJNA508483
Submitter:
Korea Food Research Institute
Date:
2019/12/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_009762275.1 (latest)
RefSeq assembly accession:
GCF_009762275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
276.0x
Sequencing technology:
PacBio RSII

IDs: 5394951 [UID] 15640928 [GenBank] 15670788 [RefSeq]

See Genome Information for Haloplanus rallus

History (Show revision history)

Comment

Bacteria and source DNA available from Research Group of Gut Microbiome, Korea Food Research Institute, 245, Nongsaengmyeong-ro, Iseo-myeon, Wanju_Gun, Jeollabuk-do, 565-851, Republic of Korea
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can ... be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_009762275.1-RS_2024_05_06
Annotation Date::05/06/2024 05:10:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,706
CDSs (total)::3,650
Genes (coding)::3,580
CDSs (with protein)::3,580
Genes (RNA)::56
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::48
ncRNAs::2
Pseudo Genes (total)::70
CDSs (without protein)::70
Pseudo Genes (ambiguous residues)::0 of 70
Pseudo Genes (frameshifted)::22 of 70
Pseudo Genes (incomplete)::52 of 70
Pseudo Genes (internal stop)::10 of 70
Pseudo Genes (multiple problems)::11 of 70
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,560,302
Total ungapped length3,560,302
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009762285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP034345.1=NZ_CP034345.1
Plasmid pMBLA003601CP034344.1=NZ_CP034344.1

Assembly statistics

MoleculeTotal
Length
All3,560,302
Chromosome 3,292,487
Plasmid pMBLA003601267,815

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haloplanus rallusHaloplanus rallus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024498175.1Haloplanus salinarumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3683.7186.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material