U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM960088v1

Organism name:
Streptomyces jumonjinensis (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL 5741
BioSample:
SAMN11619524
BioProject:
PRJNA544339
Submitter:
Memorial University of Newfoundland
Date:
2019/11/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009600885.1 (latest)
RefSeq assembly accession:
GCF_009600885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VCLA01
Assembly method:
Velvet v. 1.2.09
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina MiSeq

IDs: 5194861 [UID] 15136798 [GenBank] 15174748 [RefSeq]

See Genome Information for Streptomyces jumonjinensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Kapil Tahlan

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/24/2019 20:48:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,612
CDSs (total)::7,541
Genes (coding)::7,035
CDSs (with protein)::7,035
Genes (RNA)::71
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::506
CDSs (without protein)::506
Pseudo Genes (ambiguous residues)::77 of 506
Pseudo Genes (frameshifted)::173 of 506
Pseudo Genes (incomplete)::312 of 506
Pseudo Genes (internal stop)::47 of 506
Pseudo Genes (multiple problems)::90 of 506
CRISPR Arrays::11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,465,075
Total ungapped length8,397,557
Gaps between scaffolds0
Number of scaffolds209
Scaffold N5091,474
Scaffold L5028
Number of contigs603
Contig N5042,811
Contig L5055
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)209

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,465,0752098,397,55791,4743940

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces jumonjinensisStreptomyces jumonjinensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_039532665.1Streptomyces amakusaensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.7243.2343.49

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna