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Source database (GenBank or RefSeq) File type

ASM893154v1

Organism name:: Enterobacter kobei (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: C16
BioSample:: SAMN12289356
BioProject:: PRJNA550014
Submitter:: University of Oxford
Date:: 2019/10/09
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_008931545.1 (latest)
RefSeq assembly accession:: GCF_008931545.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. SEP-2017
Expected final version:: yes
Reference guided assembly:: na
Genome coverage:: 1557x
Sequencing technology:: Oxford Nanopore MiniION

IDs: 4837921 [UID] 14357268 [GenBank] 14456518 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008931545.1	=	GCF_008931545.1	ASM893154v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::06/11/2023 15:22:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,290
CDSs (total)::5,171
Genes (coding)::5,063
CDSs (with protein)::5,063
Genes (RNA)::119
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::8
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::41 of 108
Pseudo Genes (incomplete)::65 of 108
Pseudo Genes (internal stop)::21 of 108
Pseudo Genes (multiple problems)::15 of 108
Pseudo Genes (short protein)::1 of 108
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,366,747
Total ungapped length	5,366,747
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP042578.1	=	NZ_CP042578.1
Plasmid pC16_001	CP042579.1	=	NZ_CP042579.1
Plasmid pC16_002	CP042580.1	=	NZ_CP042580.1
Plasmid pC16_003	CP042581.1	=	NZ_CP042581.1

Molecule	Total Length
All	5,366,747
Chromosome	4,964,300
Plasmid pC16_001	275,807
Plasmid pC16_002	82,010
Plasmid pC16_003	44,630

	ANI	Query coverage	Subject coverage
Declared type	99.11	80.89	88.10
Best-match type	99.11	80.89	88.10

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ASM893154v1

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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